Salinimonas iocasae: FBQ74_14030
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Entry
FBQ74_14030 CDS
T06006
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
salk
Salinimonas iocasae
Brite
KEGG Orthology (KO) [BR:
salk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
salk03009
]
FBQ74_14030 (rlmD)
Enzymes [BR:
salk01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FBQ74_14030 (rlmD)
Ribosome biogenesis [BR:
salk03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FBQ74_14030 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
TRAM
Methyltransf_31
Methyltransf_32
Methyltransf_25
DREV
RrnaAD
TRM5-TYW2_MTfase
SAM_MT
Methyltransf_11
Motif
Other DBs
NCBI-ProteinID:
QCZ94516
UniProt:
A0A5B7YGM5
LinkDB
All DBs
Position
complement(3150279..3151610)
Genome browser
AA seq
443 aa
AA seq
DB search
MVSFYKPAKKARKGSTVKTVTVESLDMHGVGVSRSQKPIMFVEGALPGEQVKVKVTSSQK
QVSKAVTERVVKPGPLRVDPFCPYYAKCGGCQLQHISADDALSERQDAMSDYWAHHLNIT
DLPWQPAIIGTRPTYRRKARFAIDARNPNAVKIGFRQNNSKAIVDIQTCPVLERKLQEVM
PALREVLTSFPAIQHIGHIQALSGDNVTEFTLKATRDLPLTFRQALTQFAISEKVNVVIE
NMSGDFETLHREATLICKTGGEFYLTPTPDDFVQVNAQVNEKMVAQAISWLAPDRDDTVA
DWFAGLGNLSFPLASHAGHVYAVEGVAAMVQKGQAAAQQQGIENVSWQHLDLNDAASVQN
ALGHEVTKILLDPSREGAAEVCRQVSQAKTKQVLYVSCNPNSFTRDARILLDAGYNIEKI
GLIEMFPYTRHLEVMALFSHATY
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atggtcagtttttataaacctgccaaaaaggcacgtaaaggcagcacagttaaaacagtg
acagtggaaagcctggatatgcatggtgtcggggtcagtcgttcccaaaaacctattatg
ttcgttgaaggcgcgctgcctggcgagcaggtgaaggttaaagtgaccagcagtcagaag
caggtgagcaaggcggtaactgaacgggtggttaaaccaggcccgcttcgcgtcgatccg
ttttgtccctattatgcaaagtgtggcggctgccagcttcagcatattagtgccgatgac
gcccttagtgagcgacaagatgccatgagcgattattgggcgcatcacctgaatatcacc
gatttgccctggcaacctgcgattatcggaacgcgtcccacctatcgcagaaaggcccgg
tttgccatagatgcccgtaatcccaatgcggtaaaaatcggtttcaggcaaaacaacagc
aaggctattgttgatattcagacctgtccggtacttgagcgcaagctacaggaagtcatg
cctgcgctgcgcgaagtactgacatcatttccggcaatacagcatatcggtcatattcag
gcattatccggcgacaatgtgacagagtttacgcttaaagctacgcgtgatttaccgctt
acttttcgtcaggctcttacgcaatttgcgattagtgaaaaggtcaacgttgttattgaa
aatatgagcggagactttgaaaccctgcaccgcgaggctacgcttatctgtaaaaccggc
ggagaattttatttaaccccgacaccggatgatttcgtacaggttaatgcacaagttaat
gagaagatggtggcgcaggcgattagctggcttgctccggacagggatgacaccgtggcc
gactggtttgcggggttaggaaatttgagctttcctctggccagccatgccggacatgtt
tacgccgtagaaggtgtggcagcgatggtgcaaaaagggcaggccgccgcacaacaacaa
ggcattgaaaatgtctcatggcagcacctggatttgaatgacgctgccagcgtgcaaaat
gcgttggggcatgaagttaccaaaatattgctggacccttcccgggaaggcgcggcagag
gtatgcagacaggtcagccaggctaaaacaaaacaggttttgtatgtttcttgcaatcca
aacagctttacccgtgatgccagaattcttcttgacgcaggctataacattgaaaaaatc
ggcttgattgagatgtttccttatacccgtcaccttgaagtcatggcgttattctcacat
gcaacatactaa
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