Salinimonas iocasae: FBQ74_14625
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Entry
FBQ74_14625 CDS
T06006
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
salk
Salinimonas iocasae
Pathway
salk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FBQ74_14625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salk03019
]
FBQ74_14625
03009 Ribosome biogenesis [BR:
salk03009
]
FBQ74_14625
Enzymes [BR:
salk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FBQ74_14625
Messenger RNA biogenesis [BR:
salk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FBQ74_14625
Ribosome biogenesis [BR:
salk03009
]
Prokaryotic type
rRNA helicases
FBQ74_14625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
HEM4
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QCZ94625
UniProt:
A0A5B7YGJ2
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All DBs
Position
3287914..3289611
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AA seq
565 aa
AA seq
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MTTTVDLTFKDLNLPQPILQALEKVGYEKPSPIQAESIPLLLEGHDLLGQAQTGTGKTAA
FALPMLANIDADARHPQLLVLAPTRELAIQVAEAFQVYASFSQKIKVLPVYGGQSYDNQI
RQLKRGVQVVVGTPGRIIDHIKRKTLNLGELKYLVLDEADEMLRMGFIDDVETILSNAPE
ERQTALFSATMPGPIKKITQRYLKDPKHVKIESKVSTASTIRQRYCQVAGHHKLEALTRI
MEVEPFDGMIIFVRTKTATVELAEKLSARGYDVEPLNGDIPQNARERTVDKLKKGDIDIL
VATDVVARGLDVERVSHVVNFDVPYDTESYVHRIGRTGRAGRAGDAILFISHREKRMLFA
IEKTTRQPIEVMPIPSINELNETRLSKFKQSVAEACTDDSIESLMPIVESLKQETEADPE
TLLAALVKLAQGNEPLLLKESDRPDLHSKPPRQDRNSRDRGNDRERKKPRGKSKPEAGMQ
RYRIEVGHTHGAKPGNIVGAIANEANLKSKNIGAIEIYDNFSTVDLPDGMPEQTRDILRK
TRVAGQRLNLREWSDTPPKRRGPKR
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgaccactactgtcgatttgacatttaaagacctcaacttaccacaacctatcttacaa
gcccttgagaaagtcggctacgaaaagccatcgccgattcaagctgaaagtataccgttg
ctattggaaggccacgatctgttggggcaggcacaaacagggacgggaaaaacggcggcg
tttgcgctgcctatgctggcaaatattgatgccgatgccagacatccgcaattattagta
cttgcgcctactcgcgagttggccatccaggtagctgaagcctttcaggtatatgccagc
ttttcacaaaagattaaagtactgcctgtatacggtggtcagtcttatgataaccagatt
cgccagcttaaacgtggcgtgcaggttgttgtgggcacaccgggtcgtatcatcgaccac
atcaaacgcaaaacgctgaatctgggtgagctgaagtacctggtgcttgatgaagctgac
gaaatgctgcgcatgggctttatcgatgatgttgaaactattttgtccaatgcaccagaa
gagcgtcagactgcgctgttctcggccaccatgccaggaccaatcaaaaagattacccag
cgttatctgaaagatcccaagcacgtaaaaattgagtcgaaagtttctaccgcctctacc
atacgtcagcgttattgtcaggtggctggtcatcataagcttgaagccctgaccagaatc
atggaagtcgagccgtttgatggcatgatcatctttgttcgtaccaaaaccgctacggtt
gaactggccgagaagctgtctgcccggggttacgatgttgagccacttaacggcgatatc
cctcaaaacgcccgtgagcgtacagttgataagcttaagaaaggtgatatcgatattctg
gtagcgaccgatgttgtggctcgtggtctggatgttgagcgtgtcagtcacgtggtcaac
tttgacgttccttacgacacagagtcttacgttcaccgtattggtcgtactggccgtgcc
ggacgtgccggtgatgcgattctgtttatttctcatcgtgaaaagcggatgctgtttgct
attgagaaaacaacgcgtcagcccatcgaggtaatgccgattccttcaatcaacgaattg
aacgaaacccgcttatcgaagttcaagcaatctgttgcagaagcctgcaccgatgacagc
attgaatctctcatgcctatcgttgagtcgctgaagcaagaaacagaagctgatcctgaa
acgctgctggctgcgctggtcaagcttgctcagggtaacgagccgttattgctaaaagag
tcagatcgccctgacctgcacagcaaaccacctcgtcaggacagaaacagccgcgatcgt
ggtaatgatcgtgagcgcaaaaagccccgcggtaaaagtaagccagaagctggcatgcag
cgttaccgtatcgaagtaggccatacccatggtgctaagccgggcaatattgttggtgcc
attgctaatgaggccaacctgaagagtaaaaatattggtgctatcgaaatttatgacaat
ttcagcacggtggatttacctgacggtatgccagaacaaacccgcgatatattgcgtaag
acccgtgttgccggtcagcgcttaaaccttcgcgagtggagcgatacaccgcctaaacgc
cgtggcccaaagcgctaa
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