Streptomyces noursei ZPM: SAZ_12420
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Entry
SAZ_12420 CDS
T03896
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
sall
Streptomyces noursei ZPM
Pathway
sall03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sall00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAZ_12420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sall03019
]
SAZ_12420
03400 DNA repair and recombination proteins [BR:
sall03400
]
SAZ_12420
Enzymes [BR:
sall01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SAZ_12420
Messenger RNA biogenesis [BR:
sall03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SAZ_12420
DNA repair and recombination proteins [BR:
sall03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SAZ_12420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Pribosyltran
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
AKA03141
LinkDB
All DBs
Position
2853890..2856055
Genome browser
AA seq
721 aa
AA seq
DB search
MSNEDLRAAADAVLSRLVGDPGGTARLREDQWRAIEALVADHRRALVVQRTGWGKSAVYF
VATALLRARGSGPTVIVSPLLALMRNQVDAAARAGIRARTINSANTEEWDTVQAEVAAGE
VDVLLVSPERLNNPDFRDQVLPKLAAATGLLVVDEAHCISDWGHDFRPDYRRLRTMLADL
PPGVPVLATTATANARVTADVAEQLGTGEGSAEALVLRGPLDRESLSLGVLPLPDAAHRL
AWLADHLDDLPGSGIIYTLTVAAAEEVTAFLRHRGHTVASYTGKTENADRQQAEDDLLAN
RVKALVATSALGMGFDKPDLGFVVHLGSPSSPIAYYQQVGRAGRGVEHAEVLLLPGREDE
AIWKYFASLAFPPEEQVRRTLDVLAAADRPVSLPALEPQVELRRSRLEIMLKVLDVDGAV
HRVKGGWTATGRPWAYDAERYAWVARQRAAEQQAMRDYAAGSGCRMEFLRRQLDDEEAAP
CGRCDNCAGARFTPEVSAAALDAARGELGRPGVEVEPRRMWPTGLPTVGVDLKGRIPAGE
LAATGRALGRLSDIGWGNRLRPMLAPQAPDGPVPDDVASAVVTVLADWAKGPGGWASGAP
DAPARPGGVVSLGSHSRPQLIRSLGERIAAVGRMPFLGTVASMDDDPGTRIPRSNSAQRL
RALHSTLVVPPELAEALASAGGPVLLVDDFADTGWTLAVAARLLRRAGADAVFPLVLAVQ
G
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgagcaacgaagacctgcgtgccgcggccgatgccgtcctcagccgactcgtcggggat
cccggcgggacggcccggctgcgcgaggaccagtggcgggcgatcgaggcgctggtggcc
gaccaccgccgtgccctggtcgtgcagcgcaccggctggggcaagtccgcggtctacttc
gtcgcgacggcgctgctgcgggcgcgcggcagcgggccgacggtgatcgtctcgccgctg
ctcgcgctgatgcgcaaccaggtcgacgcggcggcccgcgccggcatccgggcgcgcacc
atcaactccgccaacaccgaggagtgggacaccgtgcaggccgaggtggcggccggtgag
gtggacgtcctgctggtgagccccgagcggctcaacaacccggacttccgcgatcaggtg
ttgcccaagctcgcggcggccaccgggctgctggtggtggacgaggcgcactgcatctcc
gactggggccatgacttccgtccggactaccggcggctgcgcacgatgctggccgatctc
ccgcccggggttccggtgctcgccacgacggccaccgccaacgcccgggtgacggccgac
gtcgccgagcagctggggacgggtgagggctccgccgaggccctggtgctgcgcgggccc
ttggaccgggagagcctgagcctgggggtgctgccgctgccggacgccgcgcaccggctg
gcgtggctggccgaccatctggacgacctgccgggctcggggatcatctacacgctcacc
gtcgcggccgccgaggaggtcaccgcgttcctgcggcaccgggggcacacggtcgcctcg
tacaccggcaagacggagaacgccgaccgtcagcaggcggaggacgacctgctcgccaac
cgggtgaaggcgctggtggcgacgtccgcgctggggatgggcttcgacaagcccgacttg
gggttcgtggtgcacctgggttcgccgtcgtcgccgatcgcgtactaccagcaggtgggc
cgggccggccgcggtgtcgagcacgcggaggtgctgctgctgccgggccgggaggacgag
gcgatctggaagtacttcgcctcgttggcgttcccgccggaggagcaggtgcggcggacg
ctggacgtgttggcggcggcggaccggccggtgtcgctgccggcgctggagccgcaggtc
gaactgcgccgctcccgcctggagatcatgctcaaggtgctcgacgtggacggcgccgtc
caccgggtcaagggcggttggacggccaccggccggccgtgggcgtacgacgcggagcgc
tatgcgtgggtggcgcggcagcgggcggccgagcagcaggcgatgcgggactacgccgcg
gggtcggggtgccggatggagttcctgcggcggcagttggacgacgaggaggcggctccg
tgcggccggtgcgacaactgcgcgggagcgcggttcacccccgaggtgtccgccgccgcg
ctggacgcggcccgtggtgagctcggccgccccggcgtcgaggtggaaccgcggcggatg
tggccgacgggtctgccgaccgtcggcgtcgacctcaagggccggatcccggcgggcgaa
ctggccgcgacgggccgggcgttggggcggctttcggacatcgggtggggcaaccggctg
cggccgatgctcgccccgcaggcgccggacggtccggtgcccgacgacgtggcgtccgcg
gtggtgacggtgctcgccgactgggccaagggtcccgggggctgggcctcgggggccccg
gacgccccggcgcgcccggggggcgtcgtcagcctcggctcgcacagccgcccgcagttg
atccggtcgctcggcgaacggatcgcggcggtgggccggatgccgttcctgggcaccgtg
gcctcgatggacgacgaccccgggacgaggatcccgcggagcaacagcgcccaacggctg
cgggccctgcacagcacgctggtggtgccgccggaactggccgaggcgttggcgtcggcc
ggcggtccggtgctcctggtggatgacttcgcggacaccggttggacgctggcggtggcc
gcgcggttgttgcgcagggccggagccgacgcggtgttcccgctggtcctcgccgtgcag
gggtag
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