Salinimonas sediminis: D0Y50_08770
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Entry
D0Y50_08770 CDS
T05624
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
salm
Salinimonas sediminis
Brite
KEGG Orthology (KO) [BR:
salm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salm03032
]
D0Y50_08770
03400 DNA repair and recombination proteins [BR:
salm03400
]
D0Y50_08770
Enzymes [BR:
salm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
D0Y50_08770
DNA replication proteins [BR:
salm03032
]
Prokaryotic type
DNA Topoisomerases
D0Y50_08770
DNA repair and recombination proteins [BR:
salm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
D0Y50_08770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
AXR06450
UniProt:
A0A346NLP3
LinkDB
All DBs
Position
1945744..1946742
Genome browser
AA seq
332 aa
AA seq
DB search
MAQPERNIRRVRRGKGFEYFYPSGRKISGQRVIQRIAKLGIPPRWQDVRIAQDKDADLQA
TGYDMKGRKQYIYHTEWHARQQQAKFSRLAEFGQALPAFREYCWSHVNQQKWREDKTLAL
VCLLLDHTGLRAGNRQYTTQNNTHGLTTLRRKHVQHDDSATRLSFIGKHNKPRDVEIDDP
RLAELVAQSAEAQGYALFRYEDGQGQWHDVDSDDVNSFIHQHLGEAFSCKDFRTWGASRF
GLFSLPDVDLIVRENSRRSWPATLTSHVAKMLGNTPAVCRQYYLHPQLVKLVENDQPRVK
TIDEVRRIVEKQGLSDASVSATEKLLHSIIKI
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaccggaacgtaatatcagacgggtcagacgtggcaaagggtttgaatatttt
tatccgtctggacgtaaaatatctggacaacgcgttattcaacgcatcgctaagttagga
attccgccgcgctggcaggatgtgcgtatcgcccaagacaaagatgctgacctgcaggct
accggatatgacatgaaggggcgaaagcaatatatttatcatactgaatggcacgcccgg
caacagcaagcgaagttttcccgtttagccgagttcggccaggcgctccccgcgtttcgg
gaatattgctggtcgcacgtgaatcaacaaaagtggcgtgaagataaaacactcgcgttg
gtctgtttgttgctcgaccacaccggtttacgagccggcaaccggcagtacactacccaa
aataatacgcacggccttaccactttacgccgtaagcatgtccagcatgacgattcagcc
acccggttatcgtttatcggtaagcacaacaaacccagagacgtagaaatagatgatcct
cgcttagccgagttggtggcccaaagcgctgaagcgcagggctacgcgttatttcgttat
gaagatggccaaggccagtggcacgatgtggactccgatgacgtgaatagttttattcac
caacatttaggtgaggcgttttcatgcaaggattttcgtacctggggtgccagtcgcttt
ggtttgttttcactgccggatgtagaccttattgtacgcgagaattcgcggcgctcatgg
cctgccacactgacctcgcacgtagctaaaatgctgggtaatacaccggcagtgtgccgc
caatattatctgcaccctcaattggtaaaattagtcgaaaacgatcagcccagggtgaaa
accatcgatgaagttcgccgtattgttgaaaaacaggggctcagtgatgcctcagtcagc
gccaccgaaaagctattacattcaataattaaaatttaa
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