Salinisphaera sp. LB1: SALB1_0438
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Entry
SALB1_0438 CDS
T05476
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
saln
Salinisphaera sp. LB1
Pathway
saln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SALB1_0438
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saln03019
]
SALB1_0438
Enzymes [BR:
saln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SALB1_0438
Messenger RNA biogenesis [BR:
saln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SALB1_0438
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
AWN14645
UniProt:
A0A2Z3J2L6
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All DBs
Position
482216..483532
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AA seq
438 aa
AA seq
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MSDTETVDDATPRKLVTDTRLDALGLHDSIVSGLNTRGFTHATPIQAETLPLALAGVDIA
GQAHTGTGKTAAFLLATLDRLIRQAPEPSEHAPSGAAQPRALILAPTRELADQIYQDALP
LAADTGLKCVVCYGGTGYDTQREAIAAGVDILIGTPGRLIDYYKQKIYTLKAIEVAVLDE
ADRMFDLGFIDDIRYMLRKMPPPGRRQNLLFSATLSHRVLELAYEHMNDPKLVRTDTETV
NIGAIEQKLYHVSKDDKLALLIGVLRRIGDGRTLIFINTKRMAERIQDTLIANGFNAATL
SGDVAQNKRLRLLEEFKTGQLPIMVATDVAARGLHIPDVSHVINFDLPQDAQDYVHRIGR
TARAGNTGQAISFACEEYVYSLPDIEAYIEHKIDAEMPTEDAFVRDYTRAPQRKRKPRSG
GNNRRRGGNGNRRSPGGR
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgagcgataccgaaacagtcgacgacgccaccccgcgcaagctggtcaccgacacccgc
ctcgacgcgctcggcctgcatgacagcattgtatcgggtctgaacacgcggggctttacc
catgccaccccgatccaggccgagaccctgccgctggcgctcgccggcgtcgacattgcc
ggccaggcgcataccggcaccggcaagaccgccgctttcctgctggccaccctcgaccgg
ctgatccggcaggcgccggaacccagcgagcatgccccctccggcgcggcacagccccga
gccctgattctggcaccgacgcgcgagctggccgaccagatctatcaggatgcgttgccg
ctggctgccgacacaggccttaaatgcgtggtctgttatggcgggacgggctacgacacc
cagcgcgaggcgatcgcggcaggcgtggatatcctgatcggcacgccgggccgcttgatc
gactattacaagcagaagatctatacgctcaaggcgatcgaggtcgccgtgctggacgag
gccgatcgcatgttcgacctcggcttcatcgacgatatccgctacatgttacgcaagatg
ccgccccccgggcggcgccagaacctgctgttctcggccaccctgtcgcatcgcgtactc
gagctcgcctacgagcacatgaacgatccgaagctggtacgcaccgataccgaaacggtc
aatatcggcgccatcgagcagaagctctatcacgtctccaaggacgacaagctcgcactg
ctgatcggcgtcctgcggcgcatcggcgacgggcgcacgctgatcttcatcaataccaag
cgcatggccgagcgcattcaggacacgctgatcgccaatggcttcaatgcggcgaccctg
tccggcgacgtggcacagaacaagcggctgcgcctgctggaggaattcaagaccggccaa
ctcccgatcatggtcgccaccgacgtcgcggcccgcggcctgcacatcccggatgtgtcg
catgtgatcaacttcgatctgccgcaggacgcccaggactacgtccatcgcatcggccgg
acggcacgggccggcaacaccgggcaggccatctccttcgcctgcgaggagtacgtctac
tcgctgcccgacatcgaggcctacatcgagcacaagatcgatgccgagatgccgaccgag
gacgcgttcgtgcgcgattacacccgcgcgccgcagcgcaagcgcaagccgcgcagcggc
ggcaacaaccggcggcgcggcggtaacggcaatcggcgatccccgggcggccgctga
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