Salinisphaera sp. LB1: SALB1_2120
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Entry
SALB1_2120 CDS
T05476
Name
(GenBank) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
saln
Salinisphaera sp. LB1
Pathway
saln03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
saln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
SALB1_2120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
saln03400
]
SALB1_2120
Enzymes [BR:
saln01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
SALB1_2120
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
SALB1_2120
DNA repair and recombination proteins [BR:
saln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
SALB1_2120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AWN16318
UniProt:
A0A2Z3JBB5
LinkDB
All DBs
Position
complement(2286685..2287500)
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AA seq
271 aa
AA seq
DB search
MPELPEVETTRAGVEPHVAGQRVRTVIVRQPQLRWPVSAALACDLPGQMIHGVRRRAKYL
LFAADTGHVCLHLGMSGRLRVVPADTPVQTHDHVDIVLENDTTLRFNDARRFGSLFWLTG
DPQAFPLLARLGPEPLSDDFDGAWLKTRSSGRRTAVKAFIMDATVVVGVGNIYASEALHA
AGIHPRRAAGRISASRYEALAVAIKRVLGEAIAVGGTTLRDYIGVDGDTGYFQLSLAAYG
REGRPCPRGCGPIRREVIGQRSTFFCPICQT
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaactccccgaagtcgaaaccacccgcgcgggcgtggaaccgcatgtggccggc
caacgtgtgcgcacggtgatcgtccgccagccgcagttgcgctggccggtgtcggcggcg
ctggcgtgcgacctgcccggccagatgattcacggcgttcgtcgccgcgccaaatacctg
ttgttcgccgccgataccgggcatgtctgcctgcatctcggcatgtccggccgactgcgg
gtggtgccggccgatacgccggtgcaaacgcacgatcatgtcgatatcgtgctcgaaaac
gatacgacactgcgcttcaacgatgcccgccgcttcggctccctgttctggctcacgggc
gatccgcaggcgttcccgctgctggcacggctcggccccgagccgttgtcggacgatttc
gacggcgcctggctgaagacgcgctcgtccggccggcggaccgcggtcaaggctttcatc
atggatgccacggtggtggtcggcgtcggcaatatctatgcctcggaagcgctgcacgcg
gccggcattcatccacgccgcgcggccggacgcatcagcgcatcgcgctacgaggcactc
gccgtcgccatcaaacgcgtgctcggcgaggcgatcgcggtgggcggcacgacgctgcgc
gattacatcggcgtggatggcgataccggctattttcagctgtcactggccgcttacggc
cgcgaaggccggccctgtccgcgcggctgcgggcccatccggcgcgaggtgatcggccag
cgcagcaccttcttctgtcctatctgccagacctga
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