Salinisphaera sp. LB1: SALB1_2276
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Entry
SALB1_2276 CDS
T05476
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
saln
Salinisphaera sp. LB1
Pathway
saln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SALB1_2276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saln03019
]
SALB1_2276
Enzymes [BR:
saln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
SALB1_2276
Messenger RNA biogenesis [BR:
saln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SALB1_2276
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
CMS1
Flavi_DEAD
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AWN16474
LinkDB
All DBs
Position
complement(2468491..2469876)
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AA seq
461 aa
AA seq
DB search
MSFDSLGLSPHLLASIADSGYSTPTPIQSKAIPAIIDGADVLGAAQTGTGKTAAFVLPIL
QRLGQTHEKKPRVLVLAPTRELAAQVAESVSTYGANTQLKRTVVFGGVGYQPQITAFKKG
VDIIVATPGRLLDHLQNGHIDLSNLNTLVLDEADRMLDMGFIHDIKRVLKYVPAQRQTLL
FSATFSNDIRKLAGSLLTRPIEIDVAPRNSTAERVAQRVIMVEKPRKRAVLSHLIGSNNW
SQVLVFARTKHGANRLVKQLETDGLTAAALHGNKSQNARTKALDGFKNGTVRVLVATDIA
ARGIDIDSLPHVVNYELPNVPEDYVHRIGRTGRAGAEGEALSLVGPEERKDLKSIEKLIG
RQIERFQPEGIDLRAPQGSADTDDDDRRPARRPGNGKPSRGRPGNDNKPRADGDKSAPRQ
AKPHHERARHEDGSDKPRRSNTRRGKRGGRGGQRQGNGAPN
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgtcattcgactccctcggcttgtcgccgcatctgctggcgtcaatcgccgattcgggc
tatagcacgcctaccccgattcaatccaaggccattccggccatcatcgacggcgccgac
gtgctgggtgcggcccagaccggcaccggcaagactgcggccttcgtgctgccgatactt
cagcgccttggccagacccacgagaaaaagccgcgtgtactcgtgctcgcccccacccgt
gaactggccgcccaggtcgccgaatcggtgagcacctacggcgccaacacgcagctcaag
cgcaccgtcgtgttcggcggcgtcggctatcagccgcagatcaccgcgttcaagaaaggc
gtggacatcatcgtggccacaccgggccgcctgctcgatcatttgcagaatggccacatc
gatttgtcgaacctgaatacgctggtactcgacgaagccgatcgcatgctcgacatgggc
ttcatccacgacatcaagcgcgtgctgaagtatgtgccggcccagcgccagacgctgttg
ttttcggcaaccttctccaacgacatccgcaagctggccggttcgctgctgacccggccg
atcgagatcgacgtcgccccgcgcaactccaccgccgagcgtgtggcccagcgcgtgatc
atggtcgaaaagccgcgcaagcgcgccgtgctcagtcatctgatcggttccaacaactgg
tcgcaggtgctggtgttcgcccgcaccaagcacggcgccaatcggctggtgaaacagctg
gaaaccgacggcctgaccgccgccgccctgcacggcaacaagtcgcagaacgcgcgcacc
aaggcactcgacggcttcaagaacggcacggttcgcgtgctcgtggccaccgatatcgcg
gcccgcggcatcgatatcgactcgctgccgcatgtggtgaactacgagttgcccaacgtg
cccgaggactatgtgcatcgcatcggccgcaccggccgcgccggcgccgagggcgaagcc
ttgtcgttggtgggcccggaagaacgcaaggatctcaagagcatcgaaaaactgatcggc
cgtcagatcgagcgcttccagccggaaggcatcgacctgcgcgcaccgcagggcagcgcc
gatacggacgacgacgatcgccgaccggcgcgtcgcccgggcaacggcaagccctcgcgt
ggacggcctggcaacgacaacaagccccgtgcggatggcgacaagagcgcgccgcgtcag
gccaagccgcatcacgaacgcgcgcgccacgaggacggcagcgacaaaccccgtcgcagc
aacacgcgccgtggcaagcgtggcggccgcggcggtcagcgccagggcaacggcgcaccc
aactga
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