Salinisphaera sp. LB1: SALB1_3169
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Entry
SALB1_3169 CDS
T05476
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
saln
Salinisphaera sp. LB1
Pathway
saln03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
saln00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SALB1_3169
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saln03019
]
SALB1_3169
03400 DNA repair and recombination proteins [BR:
saln03400
]
SALB1_3169
Enzymes [BR:
saln01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SALB1_3169
Messenger RNA biogenesis [BR:
saln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SALB1_3169
DNA repair and recombination proteins [BR:
saln03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SALB1_3169
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AWN17363
UniProt:
A0A2Z3JIG1
LinkDB
All DBs
Position
complement(3474282..3476084)
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AA seq
600 aa
AA seq
DB search
MAARSAQSVLTSVFGYSAFRGQQADIIAHVVDGGDALVLMPTGGGKSLCYQIPALVRPGV
AVVVSPLIALMADQVAALRQLGVAAAYLNSTLDAASQAAIERDVASGALDIVYVAPERLL
QPRMLNLLQRSSIALFAIDEAHCVSQWGHDFRPEYRQLAALAEQFPDVPRMALTATADLP
TRAEIIERLALEDAARYLHSFDRPNIQYRVAERGNAKQQLADFIEREHPGQAGIVYCLSR
RKVEDTAEWMTHAGHTALPYHAGLSPAMREHHQSRFLREEGVIICATVAFGMGIDKPDVR
FVAHLDLPASIEAYYQETGRAGRDGEPATAWMLYGLGDAVQRRRMIEQGAAAEDRKRVER
AKLDAMLAYCEIASCRRINLLGYFGEQCETACGNCDTCLNPPETYDATRYARMALSAIYR
TGQRFGTGYVVDHLRGAHSDRARDLGHDALSTAGIGDDLSAKQWRSIIRQLIALGYIHVE
QAYGGLQLAAGCRELLRGEQTLELRVDRGGKRSRRAVKKALPPIEIEDEPLWEALRALRL
ELAREQDVPPYVIFHDATLREMLARRPTDVAELSDVPGVGEKKRDAYGRAFVETIAQHVS
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
gtggcagcgcgctcggcgcaatcggtgctgacgtcggttttcggctacagcgcgttccgc
gggcaacaggccgatatcatcgcgcatgtcgtcgacgggggtgatgccctggtgctgatg
cccaccggcggcggcaaatcgttgtgctatcagatcccggcgctggtgcgtccgggggtc
gcggtcgtggtgtcaccgttgatcgcattgatggcggatcaggtggcggcgttgcggcaa
ctgggtgtggccgcggcctatctgaattccaccctcgacgccgcatcgcaggccgcgatc
gaacgcgatgtcgccagcggcgccctggatatcgtctatgttgcgccggaacgactgctc
cagccgcgcatgctgaatctcctgcagcgttcgtcgatcgcgctgttcgccatcgacgag
gcgcattgcgtatcgcagtgggggcacgactttcggccggaatatcgccagctcgcggca
ttggccgagcagtttccggatgtgccgcgcatggcactcaccgcgaccgccgatctgccg
acgcgggcggaaatcatcgagcgtctggcgttggaagacgcggcgcgttatctgcacagc
ttcgatcggccgaatattcagtaccgggtcgccgagcgcggcaacgccaaacaacagctc
gccgacttcatcgagcgcgagcatcccgggcaggccggcatcgtgtattgtctgtcgcgg
cgcaaggtcgaggataccgctgagtggatgacgcacgccggccatacggcgctgccctat
cacgccggcctgtccccggccatgcgcgagcatcaccagtcgcggtttctacgcgaggaa
ggcgtgatcatctgtgcgacggttgccttcggtatgggcatcgacaagcccgacgtgcga
ttcgtggcgcatctcgatctgccggccagcatcgaagcctattatcaggaaaccggtcga
gccggtcgcgacggtgaacccgccacggcctggatgctctacgggctcggcgatgccgta
cagcggcgccgcatgatcgagcagggcgcagccgccgaagaccgcaagcgggtcgagcgg
gccaagctggacgcgatgctcgcatactgcgagatcgccagctgccgacgtatcaacctg
ctcggttatttcggtgagcaatgcgagaccgcctgcggcaattgtgacacctgtctcaat
ccgccggaaacctatgacgccacccgctatgcacgcatggcgctatcggcgatatatcga
accggtcaacgcttcggtacgggctatgtcgtggatcatctgcgcggcgcacactcggat
cgcgcgcgcgatctcgggcatgatgcgctgtcgacagccgggatcggcgacgatctttcg
gccaagcagtggcgctcgatcattcgccagctgattgcgctcggctatattcacgtcgag
caggcctacggtggcctccagctggccgccggctgtcgcgagttgctccgcggcgagcaa
acgctggagctgcgggtggatcgcggcggcaaacgctcgcgccgggcggtcaagaaggcg
ctgccgccgatcgagatcgaggatgagccactctgggaggcgttgcgggcgctgcggctg
gagttggcgcgcgagcaggatgtgccgccctacgtgatcttccatgacgccacgctgcgc
gagatgcttgcgcggcgccccaccgatgtcgccgagttgtcggatgtgccgggcgtgggt
gaaaagaaacgcgatgcttatggccgtgcctttgtcgagaccatcgcgcaacatgtgagt
tag
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