Salinisphaera sp. LB1: SALB1_3342
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Entry
SALB1_3342 CDS
T05476
Name
(GenBank) 3'-to-5' oligoribonuclease (orn)
KO
K13288
oligoribonuclease [EC:3.1.-.-]
Organism
saln
Salinisphaera sp. LB1
Pathway
saln03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
saln00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
SALB1_3342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
saln03019
]
SALB1_3342
03009 Ribosome biogenesis [BR:
saln03009
]
SALB1_3342
Messenger RNA biogenesis [BR:
saln03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SALB1_3342
Ribosome biogenesis [BR:
saln03009
]
Eukaryotic type
Pre-60S particles
RNases
SALB1_3342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AWN17536
LinkDB
All DBs
Position
complement(3677849..3678394)
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AA seq
181 aa
AA seq
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MSYADDNLIWIDLEMTGLDPDADRIIEIATLVTDANLHILAEGPVLAVRQSDDRLQGMDQ
WNTRQHNASGLVARVRASSVDEVEAQRRTIEFLESYVPARRSPMCGNSICQDRRFLARYM
PELEAYFHYRHIDVSTLKELARRWAPEVASGFSKDSSHLAMDDIRDSIEELSYYRDTLLK
V
NT seq
546 nt
NT seq
+upstream
nt +downstream
nt
atgagctacgccgacgataacctgatctggatcgacctcgagatgacgggcctcgacccg
gacgccgatcgcatcattgagatcgccacattggtcaccgatgcgaatcttcacatactc
gccgaagggccggtcctggccgtccgccagagtgatgatcggctgcagggaatggaccaa
tggaacacgcgccagcacaacgcctccgggctggtagcgcgggttcgcgcctcgagtgtt
gatgaagtcgaagcccagcgtcggaccatcgagtttcttgaaagctacgtgcccgcgcgt
cgctcgcccatgtgcggcaacagcatctgccaggatcgccgctttctcgcccgctacatg
cccgagctggaggcctacttccattaccggcatatcgatgtcagcaccctcaaggaactt
gcccgccgctgggcgcccgaagtggcgagcggcttctccaaggattcgagtcatctggcc
atggacgacatacgcgactcgatcgaggagctgtcctactatcgagataccctgttaaag
gtttga
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