Silicimonas algicola: EF888_00665
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Entry
EF888_00665 CDS
T05779
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
salo
Silicimonas algicola
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salo03032
]
EF888_00665
03036 Chromosome and associated proteins [BR:
salo03036
]
EF888_00665
03400 DNA repair and recombination proteins [BR:
salo03400
]
EF888_00665
DNA replication proteins [BR:
salo03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
EF888_00665
Chromosome and associated proteins [BR:
salo03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
EF888_00665
DNA repair and recombination proteins [BR:
salo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
EF888_00665
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_euk_2
HU-CCDC81_bac_2
DCD_N
Motif
Other DBs
NCBI-ProteinID:
AZQ65771
UniProt:
A0A316G2K8
LinkDB
All DBs
Position
123758..124045
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AA seq
95 aa
AA seq
DB search
MAKPLTKTQLVSALADKMESDKKSATAALDALTAVITDEVSKGGAVTLPGVGKIYCRERP
SRMVRNPATGEQIKKDADKVVKMTIAKALKDSVND
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaacccctgaccaagacccagctggtctccgctctcgcggacaagatggaaagc
gacaagaagtcggcaaccgccgccctcgacgcgctgaccgccgtcatcaccgacgaagtg
tcgaagggcggcgccgtcacccttccgggcgtcggcaagatctactgccgcgagcgtccc
tcgcgcatggtccgcaacccggcgacgggcgagcagatcaagaaggatgccgacaaggtc
gtgaagatgaccatcgccaaggcgctgaaggacagcgtgaacgactga
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