Silicimonas algicola: EF888_03565
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Entry
EF888_03565 CDS
T05779
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
salo
Silicimonas algicola
Pathway
salo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EF888_03565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salo03019
]
EF888_03565
03009 Ribosome biogenesis [BR:
salo03009
]
EF888_03565
Enzymes [BR:
salo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EF888_03565
Messenger RNA biogenesis [BR:
salo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EF888_03565
Ribosome biogenesis [BR:
salo03009
]
Prokaryotic type
rRNA processing factors
EF888_03565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AZQ69564
LinkDB
All DBs
Position
708195..710756
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AA seq
853 aa
AA seq
DB search
MSKKMLIDATHAEETRVVVCDGNKVEEFDFESENKRQLSGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALLAEEMAMAEAEAAEEEKPRNRRRRRKPSPEQ
ASGTGESVTAEVDESKSDDGDEEHDASPTIPGMDVVDLDDEDDVEDDLPSPPRDDSKPYV
AMDDAAEKDESIEAVSDDDTAEDIRRPRKQRQRRYKIQEVVKVRQILLVQVVKEERGNKG
AALTTYLSLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIAAEIEVPKGAGLIIRTAG
AKRTKSEIKRDYEYLQRLWEQIRELTLKSIAPAKIYEEGNLIKRSIRDLYSREIDEVMVE
GEGGFRTAKDFMKMIMPSHAKNVKFYNDPMPLFARFQVESYLAGMFNPVVQLKSGGYIVI
GVTEALVAIDVNSGKATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEER
KNNAAVEKRFKEKLKTDRARIQVGRISGFGLLEMSRQRLRPGMLEASTQPCSSCHGTGLI
RSNDSVGLTILRQLEEEGVRGRSKEVLVKAPVAIVNFLMNFKREHIAQIEVRYGMAVRVE
ADPHLISPDFTIEKFKTATRKVEAVLLPVISVDTSLMDEIDEEDLVEEAEEEEVEEAPEV
KSDEEDDRPRKKRRRRRRRRGNGRDAEGGSSDMSSDTESDSDSDDTEAAGETQADPASEP
IEASEDEAEKPKRKRTRRRKKDTSPEDAPEGESQASEPAPAVASEAPDAEPEAEEKPKRR
RSRRKKVEPEEETVEADATSEQAPEPEEQPAPPAVEETEPEPVLETAAADAPAAAEPEAD
DKPRKRGWWSIGR
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaagaaaatgctgatcgatgccacccacgcggaagaaacccgcgtcgtggtgtgc
gacgggaacaaggtcgaggaattcgactttgagtcggaaaacaagcgccaactgagcggc
aacatctacctggcgaaggtcacgagggtcgaaccctcgcttcaggccgccttcgtcgat
tacggcggcaaccgccacgggttcctcgccttttccgagatccaccccgactactaccag
atccccgtcgcggaccgcgaagcgcttctcgccgaggaaatggcgatggccgaggccgag
gccgccgaggaagaaaagccccgcaaccgccgacgtcgccgcaaaccttctcccgaacag
gcttcgggcaccggcgagtcggtgacggccgaagttgacgagtccaaatccgacgacggg
gacgaggagcacgacgcttcgcccacgatcccaggcatggacgtggtggacctcgacgac
gaggacgacgtcgaagacgacctgccctctcccccccgcgacgattcgaagccctatgtc
gcgatggacgatgccgccgagaaggacgagtccatcgaagccgtatcggacgacgacacc
gccgaggacatccgccgaccccgcaagcagcgtcagcgccgctacaagatccaggaggtc
gtcaaggtccgccagatcctgcttgtgcaggtcgtgaaggaggagcgcggcaacaagggt
gccgccctgaccacctacctcagtctagccggccgctactgcgtcctgatgccgaacacg
gcgcggggcggcggcatcagccgcaagatcacccaggccgccgaccgcaagaagctgaaa
gagatcgcagccgaaatcgaggtgcccaaaggcgccggtctcatcattcgcacggcgggc
gccaagcgcacgaagtccgagatcaagcgcgactacgaatatcttcagcgtctgtgggag
cagatccgcgaactgaccctgaagtcgatcgcgccggcgaaaatctatgaggaaggcaac
ctcatcaagcgctcgatccgcgacctctacagccgcgaaatcgacgaggtgatggtcgag
ggcgagggcggcttccgcaccgccaaggacttcatgaagatgatcatgccgtcccacgcc
aagaacgtgaagttctacaacgacccgatgccgctcttcgcccgcttccaggtcgagagc
tatctggccggcatgttcaacccggtcgtccagctcaagtcgggcggctatatcgttatc
ggcgtgaccgaggcgctggtcgcaatcgacgtcaactcgggcaaggccaccaaggaaggc
tcgatcgaggagacggcactcaagaccaacctcgaagccgccgaggaagtggcgcgccag
cttcgcctgcgcgacctcgccggactgatcgtcatagacttcatcgacatggaagagcgg
aagaacaacgccgccgtcgagaagcgcttcaaggaaaagctcaagaccgaccgtgcccgc
attcaggtcggccgcatttcgggcttcggccttctcgagatgtcgcgccagcgcctgcgt
cccgggatgctcgaagcgtcgacccagccgtgctcctcgtgccacggcacgggccttatc
cgctcgaacgacagcgtgggtctgacgatcctgcgccaactcgaggaagaaggcgtgcgg
ggccggtcgaaggaggtgctcgtcaaggcgcccgtcgcgatcgtcaacttcctgatgaac
ttcaagcgggaacacatcgcgcagatcgaggtgcgttacggcatggccgtccgcgtcgag
gccgatccgcatctgatctcgcctgacttcacaatcgagaagttcaagacagcgacccga
aaggtcgaggcggtccttctgccggttatatctgtcgacacatccttgatggacgagatc
gacgaggaggacctcgtcgaggaggccgaagaggaagaggtcgaagaagcgccagaggtc
aaatccgacgaagaagacgatcgcccgcgaaagaagcgtcggcgccgtcgccgtcgtcgt
ggcaatggtcgagatgccgaaggcggatcgtccgacatgtcctccgataccgagagcgac
agcgacagcgacgacacggaggcggccggcgaaacccaggctgaccctgcctccgagccc
atagaggcgtccgaggacgaggccgagaagccgaaacgcaaacgcacccgtcgtcggaag
aaggatacgtcaccggaagacgctcccgagggtgaatcgcaggcctccgagcctgctccg
gcggtcgcatccgaggccccagatgccgaacccgaggccgaggagaaaccgaagcggcgg
cgcagccgtcgcaagaaggtcgaaccggaggaggaaacggtcgaggccgacgcgacatcc
gagcaggcgcccgagccggaagaacaacccgcgcccccggcggtcgaggaaactgagccc
gagccggttctcgaaacggccgcagcggacgctcctgccgccgctgagcctgaagcagac
gacaaaccgcggaagcgcggctggtggtccatcggacgctga
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