Silicimonas algicola: EF888_03860
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Entry
EF888_03860 CDS
T05779
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
salo
Silicimonas algicola
Pathway
salo03030
DNA replication
salo03410
Base excision repair
salo03420
Nucleotide excision repair
salo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EF888_03860 (polA)
03410 Base excision repair
EF888_03860 (polA)
03420 Nucleotide excision repair
EF888_03860 (polA)
03440 Homologous recombination
EF888_03860 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
salo03032
]
EF888_03860 (polA)
03400 DNA repair and recombination proteins [BR:
salo03400
]
EF888_03860 (polA)
Enzymes [BR:
salo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
EF888_03860 (polA)
DNA replication proteins [BR:
salo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EF888_03860 (polA)
DNA repair and recombination proteins [BR:
salo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
EF888_03860 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EF888_03860 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Taq-exonuc
Motif
Other DBs
NCBI-ProteinID:
AZQ66342
UniProt:
A0A316GCL4
LinkDB
All DBs
Position
complement(755707..758532)
Genome browser
AA seq
941 aa
AA seq
DB search
MAFGKGHHLSLVDGSAFIFRAYHALPPLTRKSDGLPVGAVSGFVNMIWKMIEDNRGPDAP
THAAVVFDKGSHTFRNEMYDLYKANREAMPEDLRPQIPLTREATRAFNLACLEQEGFEAD
DIIATLACKARDAGGRVTIVSSDKDLMQLVGDGVEMYDAMKNARIDREGVLEKFGVYPER
VVDVQALAGDSVDNVPGAPGIGIKTAALLINEYGDLETLLERAEEIKQPKRRQVLIDHAD
QIRLSKKLVSLDCEMDLGYDLDTLEVKEPVADDLLAFLGQMEFRTITRRVAEKLGVEVPA
VAETQPAASGGLPDDSADASLPGAPDLPFDAKNYTCVTTAAELQAWIDKAHATGWISVDT
ETTSLDEMKAELVGISLAVEAGHAAYVPLAHREEGGVGLFGSDELAPNQMPLPECLARLK
PLLEDPAVLKINHNAKYDVKVLARYGIRMAPIDDTMLMSYALHAGLHNHGMDEVSERYLG
HNPIAIKTLIGSGKAQRTFDAVKIDDAVTYASEDADVTLRLWQTFRPQLHVARVATVYET
LERPLVAVLTDMEMAGVKVDKSVLSRMSNAFAQKMAQLEDEIYEAAGQKFNVGSPSQVGD
ILFEVKGLPGGKKGKTGKYSTPADVLEDLATEHALPGLILDYRQVQKLKSTYTDALQDHV
NAETGRVHTSYSIAGANTGRLASTDPNLQNIPIRTEEGRRIREAFVATPGHTLVSLDYSQ
IELRILAHTADIPALKEAFREGQDIHAATASEMFSVPLDEMTPDIRRQAKAINFGVIYGI
SGWGLARNLRIPRDEAQAFIDRYFERFPGIRTYMDDTIAFAREHMHVRTLFGRRINTPEI
NAKGPTAGFARRAAINAPIQGTAADIIRRAMIRMPDAIDGLPAKMLLQVHDELLFEVEEG
AADDLIAIAKRVMEGAAHPAVRLDVPLIVDAGRGANWALAH
NT seq
2826 nt
NT seq
+upstream
nt +downstream
nt
atggcattcggcaagggacatcacctcagcctggtcgacggctcggccttcatcttccgc
gcctaccacgcgctgccgccgctcacgcgcaagtccgatggcctgccggtcggtgcggtc
tcgggcttcgtcaacatgatctggaagatgatcgaggacaatcgcggccccgacgcgccc
acccatgccgccgtcgtcttcgacaagggctcgcacaccttccgcaacgagatgtacgac
ctctacaaagccaaccgcgaggcgatgcccgaagacctgcgcccgcagatcccgctgacc
cgcgaggcgacgcgcgccttcaacctcgcctgcctcgaacaggaaggcttcgaggccgac
gacatcatcgccacgctcgcctgcaaggcccgtgacgcgggcgggcgcgtgaccatcgtg
tcgtccgacaaggacctgatgcagctcgtcggcgacggggtcgagatgtatgacgccatg
aagaacgcccgcatcgaccgcgagggggtgctcgagaagttcggcgtctaccccgagcgc
gtcgtcgacgtgcaggcgctggccggcgacagcgtcgacaacgtgcccggcgcgcccggc
atcggcatcaagaccgccgcccttctcatcaacgaatacggcgacctcgaaacgcttctt
gaacgcgcggaagagatcaagcagccgaaacgccggcaggtgctgatcgaccatgccgac
cagatccggctgtcgaagaaactcgtcagcctcgattgcgagatggacctcggctacgac
ctcgacacgctcgaggtgaaggagccggtcgccgacgacctcctcgccttcctcgggcag
atggaattccgcaccatcacccgccgcgtggccgagaagctcggtgtcgaggtgcccgcc
gtcgccgagacccagcccgccgcctcgggcggcctgccggacgactcggccgacgccagc
ctgcccggtgcgcccgacctgcccttcgacgcgaagaactacacctgcgtcacgaccgcc
gccgagcttcaggcgtggatcgacaaggcccacgccaccggctggatctcggtcgatacc
gagacgacgagcctcgacgagatgaaggccgaactcgtcggaatcagcctcgccgtcgag
gcggggcacgcggcctacgtccccctcgcccaccgcgaggaaggcggcgtcggtctcttc
ggctcggacgagctggcgccgaaccagatgccgcttcccgaatgcctggcacgtctcaag
ccgctgctggaagaccccgccgtcctcaagatcaaccacaacgccaagtacgacgtgaag
gtgctggcgcgttacggcatccgcatggctcccatcgacgacaccatgctgatgagctac
gcgcttcacgccgggctgcacaaccacggcatggacgaggtcagcgagcgctacctcggc
cacaatcccatcgccatcaagacgctgatcggctcgggcaaggcgcagcgcaccttcgac
gcggtcaagatcgacgacgccgtaacctatgcctccgaggacgccgacgtcacgctccgg
ctctggcagacgttccgcccccagcttcacgtcgcgcgggtcgccacggtctacgagacg
ctggaacgccccctcgtcgccgtcctgaccgacatggaaatggcgggcgtcaaggtcgac
aagtccgtcctgtcgcgcatgtcgaacgccttcgcccagaagatggcccagctcgaggac
gagatctacgaagccgccggccagaagttcaacgtgggctcgcccagccaggtcggcgac
atcctcttcgaggtgaaggggctgccgggcggcaagaagggcaagaccggcaagtattcg
acccccgccgacgtgctggaggacctggcgaccgaacatgccctgcccggtctcatcctc
gactaccgccaggtccagaagctcaagtcgacctacaccgacgcgcttcaggaccacgtc
aacgccgagacgggacgcgtccacacctcctattccatcgccggcgcgaacacgggccgc
ctcgcctcgaccgaccccaacctccagaacatcccgatccgcaccgaggaaggccgccgc
atccgcgaggccttcgtggcgacgcccggccacaccctcgtcagcctcgactattcccag
atcgagttgcgcatcctcgcccataccgccgacattccggctctgaaggaggccttccgc
gagggccaggacatccacgccgccaccgcgtccgagatgttcagcgtccccctcgacgag
atgacccccgacatccgccgccaggccaaggcgatcaacttcggcgtcatctacggcatc
tccggctggggtctcgcccgcaacctccggatcccgcgcgacgaggcgcaggccttcatc
gaccgctatttcgagcgattcccaggcatccgcacctacatggacgacaccatcgccttc
gcgcgcgagcacatgcacgtccgcaccctcttcggccgccgcatcaacacgcccgagatc
aacgccaagggcccgaccgccggattcgcccgtcgcgccgcgatcaacgcgccgattcag
ggcaccgccgccgacatcatccgccgcgccatgatccggatgcccgacgccatcgacggt
ctgccggcgaaaatgctcctgcaagtccacgacgaactgctcttcgaagtcgaggaaggc
gcggccgacgacctcatcgccatcgccaagcgcgtgatggagggcgccgcccaccccgcc
gtccgtctcgacgtcccgctcatcgtcgatgcggggcgcggcgcgaactgggccctggcc
cactag
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