Silicimonas algicola: EF888_04405
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Entry
EF888_04405 CDS
T05779
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
salo
Silicimonas algicola
Pathway
salo03420
Nucleotide excision repair
salo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
EF888_04405
03430 Mismatch repair
EF888_04405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salo03400
]
EF888_04405
Enzymes [BR:
salo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EF888_04405
DNA repair and recombination proteins [BR:
salo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
EF888_04405
MMR (mismatch excision repair)
Other MMR factors
EF888_04405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
AZQ66441
UniProt:
A0A316GFQ2
LinkDB
All DBs
Position
859798..862140
Genome browser
AA seq
780 aa
AA seq
DB search
MTWGEESDFPDRMPLSQQALAARGVPYLDDLNPAQREAVEALDGPVLMLAGAGTGKTKAL
TTRIAHLLNTGRARPNEILAVTFTNKAAREMKERVARLLGQTVEGMPWMGTFHSICVKLL
RRHAELVGLKTNFTILDTDDQVRLLKQLVVAADIDEKRWPARQLAHLIDNWKNRAWTPDK
VPAAEGSAFNHRGVELYAAYQDRLKTLNAVDFGDLLLHVVTIFQTHEDVLAQYQRWFRFI
LVDEYQDTNVAQYLWLRLLAQRHRNICCVGDDDQSIYGWRGAEVGNILRFEKDFPGAKVV
RLEQNYRSTPHILAAASGVIAANRDRLGKTLFTDATEGEKVRLIGHWDGEEEARWIGEEI
ESAQQGTRGMRPFALNDMAILVRASHQMRAFEDRFLTIGLPYRVIGGPRFYERLEIRDAM
AYFRVSVSPDDDLAFERIVNTPKRGLGDKAQQKMQRAARDNGVSLVEGAKILLDEGGLTG
KGAAELKALLGGIGRWHGRALDARQNHVELAQQILEESGYTEMWQNDKTPEAPGRLENLK
ELVKALEQFENLQGFLEHVALIMDNSSEESEDKVSIMTLHAAKGLEFPVVFLPGWEDGLF
PSQRSMDESGVKGLEEERRLAYVGLTRAEELATVSFAGNRLVFGQWNSSLPSRFIDELPP
EHIEVLTPPGLYGGQQQVESDLVNRASRADVYNSPGWKRLQSRSQTRGMAQPREARDMVI
DATALSSFVEGDRVFHQKFGYGEVIAIEGDKLDISFDKAGFKKVVARFVTAAEAAGDVPF
NT seq
2343 nt
NT seq
+upstream
nt +downstream
nt
atgacttggggcgaggaatctgacttcccggaccggatgccgttgtcgcagcaagcgctg
gcggcgcgcggtgtgccgtatctcgacgacctgaaccccgcacagcgcgaggcggtcgag
gcgctggacgggccggttctgatgcttgcaggcgcgggcacaggcaagacgaaggcgctg
acgacgcggatcgcgcatctgctgaacacggggcgcgcgagaccgaacgagattcttgcc
gtgaccttcaccaacaaggccgcgcgcgagatgaaggagcgcgtggcgcgccttctgggc
cagacggtcgaagggatgccctggatgggcacctttcactcgatctgcgtcaagctcctt
cgccgccatgccgaactggtcggactgaagaccaatttcaccatcctcgacaccgatgac
caggtgcggcttctgaagcagctcgtcgtcgccgccgacatcgacgagaaacgctggccc
gcacggcagctggcgcatctgatcgacaactggaaaaaccgagcgtggaccccggacaag
gtgcctgcggcagagggctcggccttcaaccatcgcggcgtcgagctttacgcggcttat
caggatcggctgaagacgctgaacgccgtggatttcggcgaccttctcctgcacgtcgtg
acgatcttccagacccacgaggacgtcctcgcgcagtatcagcgctggtttcggttcatc
ctcgtcgacgagtaccaggacaccaacgtcgcgcagtatctctggctgcggcttctcgcg
cagaggcaccgcaacatctgctgcgtgggcgacgacgaccagtcgatctacggctggcgc
ggcgccgaggtgggcaacatcctgcggttcgaaaaggattttcccggcgccaaggtcgtg
cggctggagcagaactatcgctcgacgccgcatatcctggccgctgcatcgggcgtgatc
gcggcgaaccgggaccgtctgggcaagacgcttttcaccgacgcgaccgagggcgaaaag
gtgcgcctgatcggccattgggacggcgaggaagaggctcgctggatcggcgaggagatc
gagtcggcgcagcagggcacacgcgggatgcggccgttcgcgctgaacgacatggccatc
ctcgtgcgcgcctcgcaccagatgcgggccttcgaggaccgcttcctgaccatcggtctg
ccctaccgcgtcatcggcggaccgcgcttctacgagcggctcgagatccgggacgcgatg
gcctattttcgcgtctccgtcagccccgacgacgacctggcgttcgagcggatcgtcaac
acgccgaagcggggcctcggcgacaaggcgcagcaaaagatgcagcgcgcggcgcgggac
aatggcgtgtcgctggtcgagggggcgaagatcctgctggacgagggcgggctgaccggc
aagggcgcggcggagctgaaggcgcttctgggcggcatcgggcgctggcacggccgcgcg
ctggacgcgcggcagaaccacgtcgagctggcgcagcagatcctcgaggagtcgggctac
accgagatgtggcagaacgacaagacgcccgaggcaccgggccgtctcgagaatctcaag
gagctggtcaaggccttggagcagttcgagaatctgcaagggttcctcgagcacgtcgcc
ctcatcatggacaacagctcggaggaatccgaggacaaggtgtcgatcatgacgcttcat
gccgccaaggggttggagtttcccgtcgtcttcctgccggggtgggaggacgggcttttt
ccgtcgcagcggtcgatggacgaaagcggcgtgaaggggctcgaggaggagcggcggctg
gcctatgtcgggctgacgcgcgccgaggaactggcgacggtcagcttcgcgggcaaccgg
ctggtgttcggccagtggaactcgtcgctgccctcgcgcttcatcgacgagctgccgccc
gagcatatcgaagtgctgacgccgcccggactttacggcggccagcagcaggtggaatcg
gatctcgtgaaccgcgccagccgtgcggacgtctataattctccgggctggaagcggctg
cagagccggtcgcagacccgtggcatggcgcagccgcgcgaggcgcgggacatggtcatc
gacgccacggccctgtcctccttcgtcgagggcgaccgcgtcttccaccagaagttcggc
tatggcgaggtcatcgccatcgagggcgacaagctggacatctcgttcgacaaggcgggc
ttcaagaaggtcgtagcccgcttcgtgacggcggccgaagcggcgggcgacgtgccgttc
tga
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