Silicimonas algicola: EF888_12630
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Entry
EF888_12630 CDS
T05779
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
salo
Silicimonas algicola
Pathway
salo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EF888_12630
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salo03019
]
EF888_12630
Enzymes [BR:
salo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EF888_12630
Messenger RNA biogenesis [BR:
salo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EF888_12630
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HEM4
BARF1_ig2
Helicase_RecD
Amanitin
Motif
Other DBs
NCBI-ProteinID:
AZQ67907
UniProt:
A0A316GE53
LinkDB
All DBs
Position
complement(2549549..2550769)
Genome browser
AA seq
406 aa
AA seq
DB search
MDFDMLGLQPRLVKALIDQGITNPTPIQTQAIPHAMNGRDVLGIAQTGTGKTAAFGLPMI
HALMTRGIAPAPQTAAGLVLAPTRELANQIAEAMRTFTKGSHLKVAVVVGGASMGKQIEA
LRRGADLLIATPGRLIDLIERRAVRLNETNFLVLDEADQMLDMGFIHALRRIAPLLPADR
QTMMFSATMPKLMAELAGKFLTDPVRVEVTRPGIAANGIEQSVHFVPKAGKTDLLIQLLG
AHRGDLSLVFARTKHGAERLMKTLVSAGFDAVSIHGNKSQGQRDRAIRDFKAGKLNILVA
TDVAARGIDIPDVRHVYNYELPNVAENYVHRIGRTARAGASGQAIALCAEDEFGEFQAIE
KLLKTRIAVVGGRPWAAEHAKDQTRAKTARPRNRSRKPRGGVKYAA
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggatttcgatatgttggggcttcagccccgtctcgttaaggctctgatcgatcagggc
atcaccaaccccactccgattcaaacgcaggcgatcccgcatgccatgaacggccgcgac
gtcctgggcatcgcccagaccggcaccggcaagacagccgccttcgggcttccgatgatc
cacgcgctgatgacgcgcgggatcgcccccgcgccccagacggcggccggccttgtcctg
gcaccgacgcgcgaactggcgaaccagatcgccgaggcgatgcgcaccttcaccaagggc
agccacctcaaggtcgccgtcgtcgtcggcggcgcctccatgggcaagcagatcgaggcg
ctgcgccgtggcgcggaccttctgatcgcgacgccgggccgcctgatcgacctgatcgag
cgccgtgccgtgcggctgaacgagaccaacttcctcgttctcgacgaggccgaccagatg
ctcgacatgggcttcatccacgcgctgcgccggatcgcgccgcttctgcccgctgaccgc
cagacgatgatgttctcggctacgatgccgaaactgatggccgagttggccggcaagttc
ctgaccgaccccgtccgggtcgaggtcacgcggccgggcatcgccgcgaacggcatcgag
cagtcggtgcatttcgtgccgaaggccggcaagaccgacctgctgatccagcttctgggc
gcgcaccggggcgacctgtcccttgtcttcgcgcgcaccaagcacggtgccgagcgtctg
atgaagacgctcgtttcggcgggcttcgacgccgtgtcgatccacggcaacaagagccag
ggccagcgcgaccgcgccatccgcgacttcaaggcgggcaagctgaacattctggtggcg
accgatgtcgccgcgcggggcatcgacatccccgacgtgcgccatgtctacaactacgaa
ctgccgaacgtggccgagaactatgtccaccgcatcggccgcaccgcgcgggccggggct
tcgggccaggccatcgcgctttgcgccgaggacgaattcggcgagttccaggcgatcgag
aagcttctgaagacgcgtatcgccgtcgtcgggggccgtccctgggccgcggagcatgcc
aaggatcagacgcgcgccaagaccgcacgtccccgcaaccgcagccgcaagccgcgcggc
ggcgtcaagtacgcggcctga
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