Silicimonas algicola: EF888_15390
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Entry
EF888_15390 CDS
T05779
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
salo
Silicimonas algicola
Pathway
salo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EF888_15390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salo03019
]
EF888_15390
03009 Ribosome biogenesis [BR:
salo03009
]
EF888_15390
Enzymes [BR:
salo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EF888_15390
Messenger RNA biogenesis [BR:
salo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EF888_15390
Ribosome biogenesis [BR:
salo03009
]
Prokaryotic type
rRNA helicases
EF888_15390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Cas3-like_C_2
CMS1
Glycos_transf_N
Motif
Other DBs
NCBI-ProteinID:
AZQ68387
UniProt:
A0A316G0N4
LinkDB
All DBs
Position
complement(3140237..3142336)
Genome browser
AA seq
699 aa
AA seq
DB search
MFQPLANALSKRGYDTLTAVQDAVTDPKLQDADLVVSAQTGSGKTVGFGLAIAHTILGAD
GTVGPAAAPLALIVAPTRELALQVMRELEWLYAEAGARVTTCIGGMDIRDERRALDRGAH
IVVGTPGRLRDHIQRGSLEMGSLRAIVLDEADEMLDLGFREDLEFMLGEAPDDRRTLMFS
ATVPPMIEKLAKRFQRDAVRVTTLSAEGQHADIAYQAMRVAPHDAENAIINLLRFHDAEN
ALVFANTRASVNRLTARLTNRGFSVVPLSGELSQSERTHALQALRDGRARVCVATDVAAR
GIDLPKLDLVIHAELPSNAESLLHRSGRTGRAGRKGISALIVPPKLASKAGRLLGMAKIE
ADWIAPPSAEEILQQDEERLLADPVWTMEPTPEQRDFAAKLLSLHGPERIAAAYLAMHQS
RLSAPEDLADPGALPERKERAAFGPSSWISLSVGRDDRAEPRWLLPLLCRAGNLDKDSIG
AIRVQQSESFVEILNSAVPGFLAAIGEDGELEKGVKARKLDAAPDVAPDRAPAPREPAQS
PRQPERPAPSRSDERQDKRPTPKTRDTGPKAAAPRSLDKMARAIAEGAVKPIRTPKDRSG
GSSAPGDDKPSKKTRWDKKPSGAPTGKFESKPTSKGAVKKDLRTDNSRSDARKTDGKAKG
TSSAAGDTSKRFTPPGAAGRSGKPKPQSRFKPAGKPRKG
NT seq
2100 nt
NT seq
+upstream
nt +downstream
nt
atgttccagcccctcgccaatgcgctttcaaagcgcggctacgataccctgaccgcagtc
caggacgccgtcaccgatccaaagctgcaagacgcggaccttgtggtctcggcgcagacc
ggatcgggcaagacggtgggcttcggccttgccattgcgcacacgatcctgggcgcggac
ggcacagtgggaccggccgcagcaccgcttgcgctgatcgtcgcaccgacgcgggagctg
gcacttcaggtgatgcgcgaacttgaatggctctatgccgaggcgggcgcgcgggtgacg
acctgtatcggaggcatggacatccgcgacgagcgccgcgctctggatcgaggcgcccat
atcgtcgtcggcacgcccggtcgtctgcgcgatcatatccagcgtggctcgcttgagatg
ggcagcctgagggccatcgtcctggacgaggcagacgagatgctggacctgggctttcgc
gaagacctggagttcatgctgggcgaggcccccgatgatcggcgcacgctgatgttctcg
gccacagtgccgccgatgatcgaaaaactcgccaagcggttccagcgcgacgccgtgcgg
gtgaccacgctgagcgccgaaggccagcacgccgacatcgcctatcaggccatgcgcgtc
gccccccacgacgccgaaaacgcgatcatcaacctgctgcgctttcacgacgccgaaaac
gccctcgtcttcgccaatacacgcgccagcgtgaaccggctgaccgcgcgcctgacgaac
cggggattttccgtcgtgccgctttcgggcgagttgagccaatccgagcgcacgcacgcc
cttcaggccttgcgcgacgggcgcgcgcgggtttgcgtggcgaccgatgttgcggcgcgc
ggcatcgaccttcccaagctcgacctcgtcatccatgccgagcttccctcgaatgccgaa
agtctgctgcaccgctccggtcgaaccggacgggcagggcgcaagggcatctctgccctg
atcgtgccgcccaagctggcgtctaaagccgggcggctgcttggtatggccaagatcgag
gccgactggattgcgccgccctcggccgaggagattctgcaacaggacgaggaacgcctg
ctggccgaccccgtctggacaatggagccgacaccagagcagcgcgacttcgccgcgaaa
ctgctgtccctgcacggccccgaaagaatagctgcggcctatctggccatgcatcagtcg
cgcctgtctgcgcccgaggacctcgccgacccgggggcgctccccgagcgaaaggagcgc
gcggctttcggccccagctcctggatttctctctcggtcggccgtgatgaccgggccgag
ccgcgctggctgctgccgcttttgtgcagggctggcaatctcgacaaggactccatcggc
gcgatccgagtgcagcagtcggaaagtttcgtcgagattctgaattctgccgttcccggc
ttccttgcggccatcggcgaggacggcgaactcgagaaaggggtcaaggcccggaaactc
gacgccgcaccggacgtcgcacctgaccgcgctcctgccccccgcgaaccagcccagagc
ccgcgccagcccgaacgcccggccccgtcgcgatctgacgagcgccaagacaagcgcccg
acgcccaaaacgcgcgatacaggcccaaaagccgctgcgccgaggtctctcgacaaaatg
gctcgggcgatcgccgagggcgcggtgaagcccattcgaacaccgaaggatcgcagcggc
gggtcatctgctccgggcgatgacaagccgtccaagaagacgcgctgggataagaagcct
tcgggggcaccgaccggcaagttcgagagcaagccgacgtccaagggcgccgtcaaaaag
gacctgcgaaccgacaactccaggtcggacgcgcgcaagaccgacggcaaagccaaggga
accagctcagccgctggcgatacctccaagcgcttcacacctcccggcgccgcaggcagg
tccggcaagccgaagccgcaaagtcgcttcaaaccagcggggaaaccgcgcaaagggtag
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