Silicimonas algicola: EF888_19200
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Entry
EF888_19200 CDS
T05779
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
salo
Silicimonas algicola
Pathway
salo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EF888_19200 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salo03019
]
EF888_19200 (recQ)
03400 DNA repair and recombination proteins [BR:
salo03400
]
EF888_19200 (recQ)
Enzymes [BR:
salo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EF888_19200 (recQ)
Messenger RNA biogenesis [BR:
salo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EF888_19200 (recQ)
DNA repair and recombination proteins [BR:
salo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
EF888_19200 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
AZQ69069
UniProt:
A0A316GH17
LinkDB
All DBs
Position
complement(3878345..3880396)
Genome browser
AA seq
683 aa
AA seq
DB search
MDGAQVSALALLSQVFGFDGFRPMQGDIVAAVTAGEDVLAILPTGGGKSLCFQLPALIRP
GLTVVISPLIALMRDQVRALREAGVAAGALTSGNTEEETAEVFDALHRGALKLLYMAPER
LASGGTGRMLAEARVTMIAVDEAHCVSQWGHDFRPDYLRINALRRALDVPLAAFTATADA
ETRDEIVERLFDGRAPRLFLGGFDRPNIHLAFAAKESPRKQILDFAAARPGQSGIVYCGT
RAKTETLAKALSDTGGDALAYHGGMEPDARREVERRFQTDDGLVVVATVAFGMGIDKPDI
RWVAHADLPKSIESYYQEIGRAGRDGAPAETLTLYGADDIRFRRMQIDEGLAPPERRMAD
HGRLNALLGLAEAQGCRRVRLLAYFGDAAEPCGACDLCDAPPETFDGTEAVMKALSAVLR
TGESFGVGHLTDILVGSATEKVMQRGHDRLPTFGVGRDIDRRQWGAIFRQMMGHDLVRPD
PERHGGLRMTQAARPILKGEQAILLRRDTMTTVARRPAVKALVADEDAPLLSALKAKRRA
LAEAQKVPAYVIFPDRTLIEMAETRPKSLDEMARIGGVGAKKLERYGRTFLEVITGEAAA
PAHPVRRKLAGRAAGEVYDRLLSVQARLSRGEDGTGKPMSCSASLLARVAALGPDAADQV
ERVLGDRLAERFGPAFCEVLAEG
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgcgcaggtctcggccctcgctcttctgtcgcaggttttcggcttcgacggc
tttcgtccgatgcagggcgacatcgtcgctgcggtaacggcgggtgaggacgttctggcg
atcctgccgacgggtggcggcaagtctctgtgcttccagttgcccgcgctgatccggccc
ggactgaccgtcgtcatctctcccctcatcgcgctgatgcgcgaccaggttcgggccctg
cgcgaggcgggcgtcgccgcgggcgcgctgaccagcggcaacaccgaggaagagacggcc
gaggtgttcgacgcgctccaccggggggcgctcaagcttctctacatggcgccggagcgg
ctggcctcgggtggcacgggccgaatgctggccgaggcgcgcgtgacgatgatcgccgtc
gacgaggcgcattgcgtcagccagtgggggcatgacttccggcccgactatctgcggatc
aacgcgctccgccgcgcgctggacgtgccgctcgccgcgttcaccgcgacggcggacgcc
gagacgcgggacgagatcgtcgagcgtctgttcgacgggcgtgcgccccggctcttccta
ggtggcttcgaccggccgaacatccatctcgccttcgcggcgaaggagagcccgcgcaaa
cagatcctcgactttgcagcggcgcggccgggtcagtcgggcatcgtctattgcgggaca
cgcgccaagaccgagaccttggcgaaggccttgagcgacacggggggcgacgcgctggcc
tatcacggcgggatggagcccgacgcgcggcgcgaggtcgagcggcggttccagaccgac
gacgggctggtggtggtggcgacggtggccttcggcatggggatcgacaagccggacata
cggtgggtcgcgcatgccgacctgccgaagtcgatcgagtcctactaccaggagatcggg
cgcgcggggcgtgacggcgcgccggctgaaacgctgaccctttacggcgccgacgacatc
cgattccgccggatgcagatcgacgaggggctggcgccgcccgagcggcggatggcggac
cacgggcggctgaacgctcttttgggcctggccgaggcgcagggctgtcgtcgggtacgg
cttctggcgtatttcggtgatgcggcggagccgtgcggtgcctgcgatctgtgcgatgcg
ccgcccgagaccttcgacgggaccgaggcggtgatgaaggcactgtcggcggtgctgagg
acgggcgagagcttcggggtggggcacctgaccgacatcctcgtgggttccgcgaccgaa
aaggtgatgcagcgcgggcacgaccggcttccgaccttcggcgttggccgcgatatcgac
cggcgccagtggggcgcgatcttccgccagatgatggggcacgacctggtgcgccctgat
cccgagcggcatggcgggttgcggatgacgcaggccgcacggccgatcctcaagggcgaa
caggcgatcctgctccgccgcgacaccatgacaacggtggcgcggcggccagcggtgaag
gccctggtggcggatgaggatgcgccacttctgtcggcgctgaaagccaagcggcgcgcg
ctggccgaggcgcagaaggttccggcctatgtcatcttcccggaccggacgctgatcgag
atggccgaaacgcggccgaagtcgctggacgagatggcgcggatcgggggcgtcggtgcg
aagaagctggaacgctacggccggactttcctcgaggtaatcacgggcgaggcggcggcg
cctgcgcatccggtgcggcgcaagctggcaggtcgcgcggcgggcgaggtctatgatcgg
ctgctgtcggtgcaggcgcgtctgtcgcggggcgaggacgggacgggcaagccgatgagc
tgctcggcctcgcttctggcgcgtgtcgccgcgctggggcccgacgcggcggaccaggtc
gagcgcgtgctgggcgaccggctggccgagcggttcgggccggcgttctgcgaggtcctg
gccgagggctga
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