Silicimonas algicola: EF888_19295
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Entry
EF888_19295 CDS
T05779
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
salo
Silicimonas algicola
Pathway
salo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EF888_19295 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salo03019
]
EF888_19295 (rnr)
03016 Transfer RNA biogenesis [BR:
salo03016
]
EF888_19295 (rnr)
Enzymes [BR:
salo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
EF888_19295 (rnr)
Messenger RNA biogenesis [BR:
salo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EF888_19295 (rnr)
Transfer RNA biogenesis [BR:
salo03016
]
Prokaryotic type
tRNA degradation factors
EF888_19295 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
MarR
Motif
Other DBs
NCBI-ProteinID:
AZQ69086
UniProt:
A0A316FZP6
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All DBs
Position
3893742..3895997
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AA seq
751 aa
AA seq
DB search
MARIPSKKDILDWIAEHPTATAKRDIAKAFGIKGADRIDLKRVLKELEEDGQLERRRKTY
RDPDRLPPVSVLQVTGPGKDGDLYARPLEWQGDGPEPRILLIPRDSDPALGEGDRILARV
TLVRDEDHAYEARLIRRIGTNPRKVLGVFRKTAEGGRILPVDKGAAREWRVAKDATHGAK
DGELVEAEQAGPKDSMGLPRARIVTRLGDPSQPRAVFLIAIHQHGLRDDFADDAIAEADA
MEPAGMQGREDFREVPLVTIDPSDARDHDDAVWAEADPDPKNVGGFILWVAIADVSHYVT
PGSALDREAWERGNSTYFPDRVVPMLPDRLSGDLCSLHEGVPRACLVASIRIDAKGEKRD
HSFHRGLMRSDATLHYEEVQAAIDGQPNEKTVPLLETVIRPLYAAYHALATARKAREPLD
LDLPERQVILGEDGTVRSVAFKDRLDAHRLIEEFMILANVAAAETLIAKRTPLLFRVHEE
PDPDKMEALREVAQGAGLTLAKGQVLKTAHLNRLLAQAEGHDDDAIINMAVLRAMTQAYY
SPENFGHFGLALKAYAHFTSPIRRYADLVVHRALIRAHGWGGDGLTEDEIERLANTGEQI
SMTERRSMEAERDTTDRYLAAYLSDRVGSEFKGRISGIQRFGAFVRLDETGADGLIPIRE
IGREYFHFDRDSQTLMGSETGMTLTIGQRVTVRLSEAVPVTGGILLELLEVEGGALPAAP
RKGRGKGPVRRKEKAGAAKARKERKVARRRK
NT seq
2256 nt
NT seq
+upstream
nt +downstream
nt
atggcccgtatcccctcgaaaaaggacatcctcgactggatcgccgagcatccgacggcg
accgcgaagcgcgacattgccaaggccttcggcatcaagggcgcggatcggatcgacctg
aagcgcgtcttgaaagagctcgaagaggacggccaactcgagaggcggcgcaagacctac
cgcgacccggaccgcctgcctcccgtctccgtcctccaggtcacgggcccgggcaaggac
ggcgacctctacgcccgtccgcttgaatggcagggcgacggacccgagccgcgcatcctt
ctgataccgcgcgactccgatcccgctcttggtgagggcgaccgcatcctcgcgcgggtg
accctcgtccgggacgaggaccatgcctacgaagcccgcctgatccgccgcatcgggacg
aacccgcggaaggtccttggcgtcttccgcaagaccgccgagggaggccgcatcctgcct
gtcgacaagggcgcggcgcgggaatggcgagtggcaaaggatgcgacgcacggcgcgaag
gacggcgaactggtcgaggccgagcaggctgggccgaaggacagcatgggtcttccacgt
gcacggatcgtgacgcgcctgggtgacccgtcgcagccgcgcgctgtgttcctcatcgcc
attcaccagcacggactgcgcgacgacttcgccgacgacgcgatcgccgaggccgacgcg
atggagccggcggggatgcaaggccgcgaggatttccgcgaggtaccgctggtcaccatc
gacccctcggacgctcgcgatcacgacgatgcggtttgggccgaagccgatcccgacccg
aagaacgtcggcgggttcatcctttgggtcgccatcgccgacgtgtcgcactacgtcacc
cccggttcggcgctggaccgggaagcctgggagcggggcaactcgacctactttcccgac
cgcgtggtgccgatgctgccggaccggctgtccggcgacctgtgttccttgcacgaaggt
gttccgcgcgcctgcctcgtcgcgagcatccgcatcgacgcgaagggcgagaagcgcgac
cactcgttccatcgcggcctgatgcgctccgacgcgacgctccattacgaagaagtgcag
gccgccatcgatggccagccgaacgagaagaccgtgcccctgctcgaaacggtgatccga
ccgctctacgcggcctaccacgcccttgcgacggcacggaaggcgcgcgagcccctcgat
ctcgacctgcccgagcggcaggtgatcctgggcgaagatggcacggtaaggtccgtcgcc
ttcaaggaccgcctcgacgcgcaccggctgatcgaggagttcatgatcctcgccaacgtc
gccgccgccgaaaccctgatcgcgaagcgtacgccgcttttgttccgcgtccacgaggaa
cccgaccccgacaagatggaggccctccgcgaggtcgcacagggggccggcctgacgctc
gccaaggggcaggttctgaagacggcacacctgaaccgccttctggcccaggccgagggt
cacgacgacgacgcgatcatcaacatggccgtcctgcgggccatgacgcaagcctactac
agccctgagaatttcggccacttcggcctcgcgctgaaggcctatgcccatttcacatca
ccgatccggcgctatgccgacctcgtcgtccaccgcgccctgatccgtgcgcacggctgg
ggcggtgacgggctgaccgaggacgagatcgagcggctggcgaacaccggcgagcagatc
tcgatgaccgaaaggcgatcgatggaagcggaacgggacaccacggaccgctacttggcc
gcctatctctcggaccgcgtcgggagcgagttcaaggggcgaatctcggggatccagagg
ttcggcgctttcgttcggctggacgagaccggcgccgacggtctgatcccgatccgtgag
atcggccgcgaatatttccacttcgaccgcgacagccagacactcatggggtccgagacc
ggcatgacgctgaccatcggtcagagggtgacggtgcgtctttccgaagcggtgccggtt
acgggcggcatccttctggaactgctggaggtcgagggcggtgcccttcctgccgcgccg
cgcaaggggcggggaaagggtcccgtccgccgcaaggaaaaggcgggggcggcgaaggcg
cgcaaggaacgcaaggtcgcgcggcgccgcaaatag
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