Silicimonas algicola: EF888_21325
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Entry
EF888_21325 CDS
T05779
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
salo
Silicimonas algicola
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salo03400
]
EF888_21325
Enzymes [BR:
salo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
EF888_21325
DNA repair and recombination proteins [BR:
salo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
EF888_21325
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
AZQ69465
UniProt:
A0A316G6J7
LinkDB
All DBs
Position
complement(4298666..4301614)
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AA seq
982 aa
AA seq
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MFEPRDTPRVFGVPPGADFPKLLVERLLAYHAGRSPEELARVRILVNTRRMQRRLSSLFA
KAGPLLLPRIGLVTEVDRVLPGLDLPSAVSSLRRRLEMAELVKALIDRDPTLAPRAAAID
LADSLARLLDEMQGEGVPVEALDAIDVGDESAHWARSLAFLKVTGTYLDSISEHGMDAEA
RRRQAILMLCDAWRRTPPPYPVIVAGSTGSRAPTAELMRTVAGLPLGAVVLPGFDRDLPE
NIWSSLLSRPGSDDHPQYRFAMFLHSLELTAGDVLPLGTPPDPARNRLISLSLRPAHVSD
QWLSEGPDLGDLLSATSGLALIEAPQPADEAGAIAVALREAVHQGRTAALITPDLMLGRR
VAAAMERWDIVPDNSAGVPLSLTASGRFLRQTVQLIAKPVHAADLIALLKHPFVAAGPER
GPHMLAAQSLEVALRRKNIAFVTLDSVGTLAEGAGLPEAWTRWLSGVLDALADAPPRDLA
GLAALHVSLAEKIASGFGSHPPSLWDDATGRAVRAVIDTFLAETSFTGDIALFDYGRLLD
KALAAESARELDRAHTGVMIWGTLEARVQGAERVILGGLNEGVWPEQPSPDPWLNRRMRA
ALGLLLPEREIGLAAHDYQQAVAAPEVVLSRAARTEESETVPSRWLNRLTNLLSGLPEQN
GPEALRQMRLRGDVFLSHSAALDSPTVRRTQAPRRPCPAPPVAARAKKYSVTELRTLVLD
PYAVYARRILGLNPLPPFLTRPDARMKGTVFHEIFERFFALDADFADADTAAKRLRDIAE
DRLSHNVPMPAVRQHWWGQLAENSDWLIDGELRRMARSTGVAREARGRFVIPGTAVEIVG
KADRIDRLRDGGLVIYDYKTGSPPDSKDVRNFDRQLLVEAVMAEGSGFPGVDPDIVAEIV
HIGTGRSPKEASILLHGIDTPEFTTADVLSELVDLVTAYGRAGTGFASRRGMDFVPYDGD
YDHLARVGEWDPSQPTVPEKIG
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagccccgcgacacgcctcgcgtcttcggcgttccgcccggagccgactttccg
aagcttctggtcgaaaggcttttggcctatcacgcagggcgttccccagaggaattggcc
cgtgttcgcatcctggtaaacacgcggcgcatgcagcgcaggctttcgtcacttttcgca
aaggcaggaccccttctactgccccgaatcggactggtgaccgaggtcgatcgggtcctt
cccggcctcgacctgccgtccgcggtctcttctttgcggcgcagactggaaatggcggaa
ctggtgaaggcgctgatcgaccgcgatccgacccttgcgccacgcgccgcagcgattgac
ctggctgacagcctggcgcggcttctggacgagatgcagggcgaaggcgtgccggtggag
gctctcgacgccatcgacgtcggcgacgagtcggcacactgggcgcgcagcctcgccttc
ctgaaggtgaccggaacctatctcgacagtatttccgaacacggtatggacgcggaggcg
aggcgccgccaagccatcctcatgctgtgcgacgcatggcggaggaccccgccgccctat
cccgtcatcgtcgctggttccacgggatcgagggcgccgacagccgaactcatgcggact
gtcgccgggctccccctcggcgccgtcgtgttgccggggttcgatcgggacctgccggag
aacatctggtcgtctttgctgtcgcgccccggctcggacgatcatccccagtacagattc
gcgatgttcttgcattcgttggagttgacggccggcgatgtcctgcctcttggcacgccg
cccgaccccgcgcgcaaccgcctgatctcgctatcgcttcgccccgcccatgtgtccgac
caatggctgtccgaagggcctgatctgggtgatctcttgtctgccacgtcgggccttgcc
ctgatcgaggcgccccagcctgcggacgaagccggagccatcgccgttgcattgagggaa
gccgttcatcaaggtcggacagcggcgctcatcacacccgacctgatgctgggacgacgc
gtcgcagctgccatggagagatgggatatcgtgcccgacaacagcgcgggagtgcccctg
tcgctgacggcgtcggggcgtttcctgcgtcagaccgttcaattgatcgcgaagcccgtc
cacgccgccgacctaatcgcgctgctcaagcatccgtttgttgccgccgggcccgaacgc
ggtcctcacatgcttgcggcgcagtcgcttgaagtggcgctgcgtcggaagaacattgcc
tttgtcacgttggacagcgtcgggacgttggccgaaggcgccggtttgcccgaggcatgg
acgaggtggctctcaggggtcctcgacgcgctggcagatgcgcccccgcgtgaccttgcg
ggactcgccgcgctgcatgtctcactggccgagaagattgcgtccggattcggcagccac
cccccgtccctctgggacgatgccaccgggcgcgccgtccgcgccgtcatcgacaccttc
ctggccgagacgagcttcaccggcgacatcgcgctgttcgattacggccggcttctcgac
aaggccctggcggcggaaagcgcgcgtgaactggaccgcgcgcatacaggcgtcatgatc
tggggcaccctcgaggcgcgcgttcagggtgcggaacgggtgatcctcggcggtctcaac
gaaggcgtgtggcccgagcagccatcgcccgatccgtggttgaacagaaggatgcgcgcg
gccctggggcttctcttgccggaacgcgagatcggccttgcggcgcatgactatcagcag
gccgtcgcagcacccgaggttgtcctgtcccgcgcggccagaaccgaagagagcgagacc
gtcccgtcgcgttggctcaatcgtctgacgaaccttctttcgggactgcccgagcagaac
ggacctgaggcgcttcgccagatgcgtctgcgcggcgacgtcttcctgtcgcactccgcg
gccctggattctccgaccgtcaggcggacccaggctccaagacgcccctgccccgccccg
cccgttgcggcccgtgcgaagaaatactcggtgaccgagttgcgcaccctcgtgctcgac
ccctacgccgtctatgcgcgacggattctgggcctgaacccgttgccgccgttcctgacg
cgacccgacgcgcggatgaaggggacggtcttccacgaaatcttcgaacgtttctttgct
ctggacgcggactttgccgatgcggacaccgccgcaaaacggttgcgcgacatcgccgaa
gaccggctgtcgcacaacgtgccgatgcccgcggtgcggcagcactggtggggtcaactt
gccgagaactccgattggctcatcgacggtgagctccgccgcatggcgcgatcaacaggc
gtcgcacgcgaggcgcggggcagattcgtcattcccgggacagcggtcgaaatcgtcggc
aaggccgaccgcatcgaccgccttcgcgacggggggcttgtcatttacgactataagacg
ggctctccgcccgattcaaaggacgttcgcaacttcgacaggcagcttctcgtcgaggcc
gtcatggccgagggcagcggctttccgggcgtggaccccgatatcgtggcggaaatcgtc
catatcggaacggggcgaagcccgaaagaggcaagcatcctcctacatgggatcgatact
cccgaattcacaacggcagacgtgctaagcgagcttgtcgacctcgtcaccgcctacggg
cgggccgggaccggtttcgcgtcgagacgcgggatggatttcgttccctatgacggcgac
tacgatcaccttgcccgcgtaggcgaatgggacccgtcgcagccgacggttccggagaag
atcggatga
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