Silicimonas algicola: EF888_21585
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Entry
EF888_21585 CDS
T05779
Name
(GenBank) bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
salo
Silicimonas algicola
Pathway
salo03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
salo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
EF888_21585
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
salo03400
]
EF888_21585
Enzymes [BR:
salo01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
EF888_21585
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
EF888_21585
DNA repair and recombination proteins [BR:
salo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
EF888_21585
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Motif
Other DBs
NCBI-ProteinID:
AZQ69512
UniProt:
A0A316GNT2
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All DBs
Position
4348865..4349716
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AA seq
283 aa
AA seq
DB search
MPELPEVETVRRGLLPAMEGVRIVGADVNRPDLRWPLPANLAERLTGTTVDRLRRRSKYI
LADLSSGETLILHLGMSGRILVSGDPLGQFHHHHPAPEKHDHVVFHMANGARITFNDARR
FGAMDLAGTESVEDHVLLRGLGPEPFGNAFNENYLVNALKGKRAPVKSALLDQRIVAGLG
NIYVCEVLHRAGISPARHAGRISATRVASLVPLVREVLADAIDAGGSSLRDYRQADGELG
YFQHTFRVYDREGEACRTDGCDGRIARIVQSGRSSFYCPKCQR
NT seq
852 nt
NT seq
+upstream
nt +downstream
nt
atgccggaacttcccgaagtcgagacggttcgtcgtggcctccttcccgcaatggagggg
gtccgcatcgtcggcgcggatgtgaaccggcctgacctgagatggcccctgccggcgaac
ctcgcggagcgtctgacaggaaccaccgtcgatcgtttgcggcgccgttcgaagtacatc
ctggccgacctctcgtccggcgagacgctgatcctgcatctgggcatgtccgggcgaatc
ctggtctcgggcgacccacttgggcagtttcaccaccaccatccagcgccggagaagcac
gatcatgtcgtctttcacatggcgaacggtgcgcgcatcaccttcaacgacgcccggcgc
ttcggcgcgatggaccttgcgggcaccgagtcggtcgaggatcacgtcctcttgcggggt
ctcgggcccgagccgttcggaaacgccttcaacgagaactatctcgtgaacgccctgaag
ggaaaacgggctcccgtcaaatctgcactcctcgaccagcgtatcgtcgcgggtctgggc
aacatctacgtctgcgaggttctccaccgcgccggcatttcgcccgcacgccatgccgga
aggatctccgccacccgggtcgccagccttgtccccctcgtccgggaagttcttgccgac
gccatcgacgcgggaggatcctcgttgcgcgactatcgacaagccgacggcgaactcggc
tatttccagcataccttccgcgtctacgatcgcgagggcgaagcctgccggacggacggt
tgcgacggtcgaatcgcacggatcgtgcagtcgggccgctcgagcttctactgcccgaaa
tgccagagatga
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