KEGG T05762: 111949842

Salvelinus sp. IW2-2015 (Arctic char): 111949842

Entry

111949842         CDS       T05762

Name

(RefSeq) DNA-directed RNA polymerase II subunit RPB4

K03012

DNA-directed RNA polymerase II subunit RPB4

Organism

salp Salvelinus sp. IW2-2015 (Arctic char)

Pathway

salp03020

RNA polymerase

salp03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:salp00001]
09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    111949842
  09124 Replication and repair
   03420 Nucleotide excision repair
    111949842
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:salp03021]
    111949842
   03400 DNA repair and recombination proteins [BR:salp03400]
    111949842
Transcription machinery [BR:salp03021]
Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     111949842
DNA repair and recombination proteins [BR:salp03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      111949842

SSDB

Motif

Pfam:

RNA_pol_Rpb4 Tfb4 Rop

Other DBs

NCBI-GeneID:

111949842

NCBI-ProteinID:

XP_023822942

LinkDB

Position

LG22:complement(19622208..19624690)

AA seq 143 aa
MASSGGSTTTVGDIEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSE
VFMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSVE
GRFEDEELQQILDDIQTKRSFQY

NT seq 432 nt +upstreamnt +downstreamnt
atggcgtccagtggcggttcaacaacaactgtcggagatattgaggaggacgcttctcag
ctacttttccccaaagagttcgagaacgcggagacacttctaaactctgaggtacacatg
cttctggagcatcgcaagcagcagaacgagagtgcagaggacgaacaagagctatctgag
gtcttcatgaaaactctgaattatactgcacgtttcagccggttcaaaaacagagaaact
atcgccagtgttcgcagcttgctcttgcagaagaagctgcataagtttgagttagccagt
ttggccaacctttgtcctgaagcagcggaggaggccaaagccctcatccctagcgtggag
gggcgatttgaggatgaggagctgcagcaaatccttgatgacattcagaccaagagaagt
ttccagtactga

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