Salvelinus sp. IW2-2015 (Arctic char): 111950295
Help
Entry
111950295 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: transcription initiation factor TFIID subunit 1-like
KO
K03125
transcription initiation factor TFIID subunit 1 [EC:
2.3.1.48
2.7.11.1
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111950295
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
salp01001
]
111950295
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111950295
03036 Chromosome and associated proteins [BR:
salp03036
]
111950295
Enzymes [BR:
salp01000
]
2. Transferases
2.3 Acyltransferases
2.3.1 Transferring groups other than aminoacyl groups
2.3.1.48 histone acetyltransferase
111950295
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
111950295
Protein kinases [BR:
salp01001
]
Serine/threonine kinases: Other
TAF1 family
111950295
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111950295
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Histone modification proteins
HATs (histone acetyltransferases)
111950295
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3591
Bromodomain
TBP-binding
zf-CCHC_6
Motif
Other DBs
NCBI-GeneID:
111950295
NCBI-ProteinID:
XP_023823529
LinkDB
All DBs
Position
LG23:complement(28198577..28253516)
Genome browser
AA seq
1990 aa
AA seq
DB search
MSDSDSDEDQDRPFSLTGFLFGNINEDGQLEGDSVLDTESKKHLAGLGSLGLGNLITEIT
ASEEDDLDEDGDTGGTDSEGWVKNDADAVDYSDINEVAEDETKKYRQAMGSLQPTRRTDD
EDDYDADCEDIDAKLMPPPPPPCFSTPGGKKDDSSPTAASVGDEGDGIILPSIIAPSSLX
DKVDFSSSSDSESETDRPSAGPGSGGSPACLSLPLAGIMQKDAAKALPGVTQLFPEFRPG
RVLRFLRLFGPGKNMPSVWRSARRKRKRKHRDPQPGTPPPEGAEPMEQQGPEKKSGWDYE
YAPPPPPEQCLSDDEITMMAPIESKFSQTSGDGDKVTESRPKVAEWRYGPAQLWYDMMGV
PDDGSGFHYGFKLKEEEDDEQEKRERPEPPPPLQHPKEEGSGDEKDKQALENELFLMVTQ
LQWEDDIIWNGEDVKHKGTKTQRASLAGWLPSSMTRNANAYNAQQGIHDVYLHSTGLSRS
NSQLVPPTPPPMPKAPSIGSGSKRDKHHHDHHATHEEDAPWFSIFPIDNEELVYGRWEDN
IIWDDQAMDRMLSPPVLTLDPNDENIILEIPDEKESERMSHSPSKENKKESSLKKSRILL
GKTGVIKDEPQQNMSQPEVKDPWNLSNDEFYYPKQQGLRGTFGGNIIQHSIPAVELRQPF
FPTHMGPMKLRGFHRPSLKKYSFGTLSQPGPHAAQPLLKQIKKKAKMREQERQASGGGDM
FFMRTAQDLTGKDGDLILAEYSEEYPPLIMQVGMATKIKNYYKRKPGKDPGAPDCKYGET
VYCHTSPFLGSLHPGQLLPAFENNLFRAPIYLHKMPETDFLVLRTRQGYFIRELVDIFVV
GQQCPLYEVPGPNSKRANTHIRDFLQVFIYRLFWKSKDRPRRIRXEDIKKAFPSHSESSI
RKRXKLCADLSSTGMDSNWWECWKPDFRLPTEEEIRAMVSPEQCCAYYSMLVAEQRLKDA
GYGEKSFFAPEEENEEDFQMKIDDEVRTAPWNTTRAFIAAMKGKCLLEVMGVADPTGCGE
GFSYVKVPNKPTQQKAQDDREPQPAKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKK
LSRWEVIDVVRTMSTEQARSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLDS
TEVLSTDTDSSSAEDSDFEEMGKNIENMLQNKKTSSQLSREKEEQERKELQRMLMGEESD
RDHKGRKGFSSALSTGSHKDDDTSSVTSLNSSATGRRLKIYRTFRDEDGKEYVRCETVRK
PSVIDAYTRIRTTKDDEFIRKFAVFDEQHREEMRKERRRIQEQLRRLKRNQEKDRFKGPP
EKKAKKVKEXPDLKLKCGACGAIGHMRTNKFCPLYYQTNAPPSNPVAMTEEQEEELEKTV
IDNEELIKVEGTKIVLGKQLIESADEVRRKSLVLKFPKQHLPPKKKRRVGTTVHCDYLNR
PHKSIHRRRTDPMVTLSSVLESVINDMRDHPNTYPFHTPVNAKVVKDYYKVIPRPMDLQT
LRENVRKRVYPSREEFRENVELIIKNSATYNGAKHPITQVAQTMLDLCDEKLKEKEDRLV
RLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVQPMD
LENVRKNISKHKYQNRDVFLFDVSLVHTNSVKYNGPDSPYTKTALEIVNVCKQTLAEYDE
HLTQLEKDISTAKEAALDAADLDSLDPMTPGTYTSQPADVFDSSASVSLHRETRLFSEVK
ASLMTVPEKRGLGKGRHRRLGEEESDVDIEGFEEEEYDCKPKTPAPAEDGEGDLEDEDDE
EEMLLPPPRRRLQGHNDDDFEEDEGTSRPAHASVLYQDLLMSDGEDDASEEEGDNPFSSI
HLSESGSDSDREVEVRPPPPPRPHQETARMGLEQDDSMMSYGEDVPDETHLEDSNVSYGS
YEEPEGQTQTQTSSMGNGEGYGMSEEEEEDEEAARRRGPSVLSQVQLSEDEEDSEEFRSI
GGESDLDSDN
NT seq
5973 nt
NT seq
+upstream
nt +downstream
nt
atgtcggactcagacagtgatgaagaccaagaccgccccttctctctcactggcttcctc
ttcgggaacatcaatgaagatggtcagctggaaggagacagtgtgctggacactgaatcc
aaaaagcacctggctggcctgggctccctgggactgggcaacctcatcacagagatcact
gctagtgaggaggacgatctggacgaggatggagacacaggtggcacagactcagagggc
tgggtgaagaacgatgccgatgcagttgattattctgacatcaacgaggtggctgaagat
gagactaagaagtatcgtcaggccatgggcagcctgcagcctacgaggagaacagatgat
gaggatgactatgatgcggattgtgaggatattgatgccaagcttatgcctcctccacct
cctccatgtttctccacgcctggtggcaagaaagacgactcctctcccacggctgcaagt
gttggggatgaaggagatgggatcatcctgccctccatcatcgctccttcctctctgrta
gacaaagtggacttcagcagttcctcagactctgaatcggagacagaccggccctctgca
ggccctgggtcagggggttctccagcctgcctcagcttgcccctggctggcatcatgcag
aaggatgctgccaaagccctgcctggcgtcacacagctcttcccagagttcaggcctgga
agggtgctgcggttccttcgactgtttggccctgggaagaacatgccgtcggtgtggcgg
agcgcacgaagaaagaggaagaggaagcaccgcgacccycagccagggacacccccacca
gagggcgctgagcccatggagcagcagggaccagagaagaagtctggctgggactatgaa
tacgccccacctccacccccagaacagtgcctgtctgacgacgagatcaccatgatggcc
ccaatagagtccaagttctcccagacctctggagacggggacaaggtgacagagtccagg
cccaaggtggcagagtggcgctacggtccggcccagctctggtacgacatgatgggggtc
cctgacgatggcagtggcttccactacggcttcaaactgaaggaggaggaggacgatgaa
caggagaaacgggagaggccagaaccaccgccacctttacaacatcccaaagaggagggc
agtggtgacgaaaaggacaaacaggccctggagaatgagctcttcctgatggtcacccag
cttcagtgggaggacgacatmatttggaacggagaggacgtgaaacacaagggcactaag
acccagcgagccagyctggcagggtggctgccttccagcatgacccgcaacgccaatgcc
tacaacgcacagcagggtattcatgatgtctatctacactctacaggtctgagtaggagt
aactctcagctggtgccccccactcctccacccatgcccaaagccccttccatcggctct
ggctccaagagggacaaacaccaccacgaccatcatgccactcatgaagaggatgccccc
tggttctccatcttccctattgacaatgaggagctggtgtacgggcgctgggaggacaac
atcatctgggatgaccaggccatggaccgcatgctctcaccccctgtcctcaccctagac
cccaacgatgagaacatmattttagaaatcccagatgagaaggagtctgagcgtatgtcc
cactctccgtctaaggagaacaagaaggagtcatcactaaagaagagtcgcatcctgttg
gggaagactggggtcataaaagatgagcctcaacagaacatgtcccagcctgaggtgaag
gacccatggaacctgtccaatgatgagttctattatcctaagcagcaaggcctgaggggc
accttcggtggcaacatcattcagcactccatccctgcagtggagctgaggcagccgttc
ttccctactcacatgggacctatgaagctgcgtgggttccaccggccctctctgaagaag
tactcattcgggacgttgtcccagccaggtccccacgcagcccagcctctactcaaacag
atcaagaagaaggccaagatgcgagaacaagagcgccaggcttccggtggaggtgacatg
ttcttcatgcgtacagctcaggacctgacagggaaagacggcgacctgattctggcagag
tacagcgaggaatatcctccactcatcatgcaagtcggcatggcaaccaagatcaagaac
tactacaagagaaaaccagggaaggaccctggagctccagactgtaagtayggagagacc
gtgtactgccacacctcacctttcctgggctccctgcaccccggacagctgctgccggct
tttgagaacaaccttttccgtgcccccatctacctccacaagatgccagagacagatttc
ctggtgctgcgtacacggcagggctacttcattagagagctggtagatatctttgtggtc
ggccagcagtgtcccctctatgaggtccctggacccaactccaaacgagccaacacccat
atcagagacttcttgcaggtgtttatctatcggttgttctggaagagtaaagatcgtcca
aggagaatccgcntggaggacataaagaaagctttcccctcacattcagaaagcagcatc
cgcaaacgcntaaaactctgtgctgacttaagcagtacagggatggactctaactggtgg
gaatgctggaagcctgacttcaggctgcctactgaggaggagatcagggccatggtgtct
ccagagcagtgctgtgcctactacagcatgctggtggcagagcaaagactgaaggatgct
ggatatggtgaaaagtccttctttgccccagaggaagagaacgaggaagacttccagatg
aagattgatgatgaggtccgcacagccccttggaacacgacgcgagccttcatcgctgcc
atgaaggggaagtgtctgctggaggtcatgggggtggccgaccccacaggctgtggagag
ggattctcttacgtcaaagtgcccaacaagcccactcaacaaaaggcccaagacgaccgg
gaaccacaacccgctaagaaaactgtgacagggacagacgctgatctgagaagactgtcw
ctcaaaaacgccaagcagctgctgcgcaagttcggtgttccagaggaggagataaagaag
ctgtctcgttgggaggtgattgacgtggtgaggaccatgtccacagagcaggcccgctct
ggcgaggggcccatgagcaagtttgcmcgcgggtcccgcttctctgtagccgaacaccag
gaacgctacaaggaggagtgccagaggatctttgacctgcagaacaaagtattggattcc
acagaggtcctgtccacagacacagacagcagctcagcggaggacagtgactttgaggag
atggggaagaacattgagaacatgctgcagaacaagaagaccagctcccagctgtccaga
gagaaggaggagcaggagaggaaggagctgcagaggatgctgatgggagaggagagcgac
cgcgaccacaagggacgcaagggcttctccagtgctttgtccacgggctcccataaagat
gacgacacgtcctcggtcaccagcctgaactcgtccgccacgggacggcgcctcaaaatc
taccgcaccttcagggacgaagacggcaaggagtatgttcgctgtgagacggtccgcaaa
ccctccgtcatagacgcctacaccaggatcagaaccaccaaggatgatgagttcataaga
aagtttgctgtgtttgacgagcaacacagagaggagatgaggaaggagcggaggaggatc
caggaacagctgaggaggctgaagaggaaccaggagaaggaccggttcaagggccccccg
gagaagaaggccaagaaggtcaaggagargccagacctcaagctgaagtgcggagcttgc
ggtgccatcgggcacatgcgaaccaacaagttctgcccgctgtactaccagaccaacgcc
ccgccctccaacccggttgccatgacagaggagcaggaggaggagctggagaagactgtc
atcgacaacgaggaactcatcaaggtggagggaaccaagatcgtcctcggcaagcagctt
atcgagagtgctgatgaggtgcgcaggaagtctctggtgctgaagttccccaaacagcat
cttccccccaagaagaagagacgtgtgggaaccactgtacactgtgactacctcaatagg
ccccacaaatccatccaccgccgacgcactgaccccatggtcactctgtcctcagtcctg
gagagcgtcatcaacgacatgcgggatcaccctaatacataccccttccacacgccggtc
aatgccaaggtggtgaaggactactataaggtcatccctcgtcccatggatctgcagacg
ctacgggagaatgtgcgtaagcgtgtgtacccctcccgggaggagttcagagagaacgtg
gagctcattatcaagaacagcgccacatacaatggtgccaaacatccaataacccaggtg
gcgcagacaatgctggacctttgtgatgagaaactgaaagagaaggaagacaggctggtg
agactggagaaagctatcaaccccctgctggacgatgacgaccaggtagccttctccttc
atcctggacaacatcgtcactcagaagatgatggccgtgcctgactcttggccgttccac
catccagtcaacaagaagtttgttccagattactacaaagtgatagtccaacccatggac
ctggagaatgtccgcaagaacatatccaaacacaagtaccagaaccgggatgtgttcctg
tttgacgtcagcctggtccacaccaacagtgtcaagtacaacggtccagacagtccttac
accaagacggccctggagatagtcaacgtgtgcaagcagaccctggcagagtatgatgag
cacctgacccagctggagaaggacatctccacagctaaagaggcagctctggatgcagca
gacctggatagcctggaccccatgactcctggaacctacacatcacagcctgccgatgtg
tttgacagcagtgcctctgtgagcctgcacagagagaccagactcttctctgaggttaag
gcatctcttatgactgttccagagaagagggggttagggaagggtcgtcatagaagacta
ggagaggaggagtcggacgtggacatcgagggcttcgaggaggaggagtatgaytgcaag
cccaagacaccagctcctgctgaggatggtgagggagacctggaggatgaggatgatgaa
gaggagatgctgttgccgccgccccgcagacgactgcagggccacaatgatgatgatttt
gaagaggatgaaggcaccagtcggccagcccatgccagcgtgctgtaccaggacctgctc
atgtcagacggagaggatgacgccagcgaagaggagggagataacccgttctcctcgatc
cacctgtcagagagtggcagtgactcagacagagaggtggaggtgcgtcccccgccccct
cccagacctcaccaagagacggcccgcatgggcctggagcaggacgacagcatgatgtca
tacggggaagatgtgccggatgagacccacctggaggacagtaatgtcagttatgggagc
tatgaggagccggagggtcagacccagacccagacctccagcatgggcaatggagagggc
tacggcatgagtgaggaagaggaggaagatgaggaggcagctcggaggagaggtcccagt
gtgctttcccaggtgcagctgagtgaggatgaggaggacagcgaagagttcaggtccatc
gggggagaaagtgacttggactcagacaactag
DBGET
integrated database retrieval system
