Salvelinus sp. IW2-2015 (Arctic char): 111950425
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Entry
111950425 CDS
T05762
Name
(RefSeq) roundabout homolog 1 isoform X1
KO
K06753
roundabout, axon guidance receptor 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
salp04515
]
111950425
Cell adhesion molecules [BR:
salp04515
]
Immunoglobulin superfamily
ROBO family
111950425
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
I-set
Ig_3
ig
Ig_2
fn3
V-set
C2-set_2
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
Ig_J_second
Motif
Other DBs
NCBI-GeneID:
111950425
NCBI-ProteinID:
XP_023823775
LinkDB
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Position
LG23:34406061..34631360
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AA seq
1666 aa
AA seq
DB search
MRTMWVMWSVVTALLVAMLLSIVHSELQEGALVPETDTWDRANEDATPTPPSEHEDDNSL
GYTGSRLRQDDSPPRIVEHPSDLIVSKGEPATLNCKAEGRPAPTVEWYKDGERVETDRDN
PRSHRMLLPSGSLFFLRIVHGRRSKPDDGSYVCVARNYLGQAVSHNASLEVAILRDDFRQ
NPADVIVAAGEPAVLECQPPRGHPEPTISWRKDGTNINDRDERITIRGGKLMITNARKSD
AGKYICVGTNMVGERESEIAELTVLERPGFVKRPSSVMVLADESVEFHCEARGDPVPTVR
WRKEDADLPKGRYEILEDHTLSVRGVAPSDEGSYTCVVENMVGKAEASATLTVHVFTVPP
AFAMRPRNQVVAVGRMVTFQCEATGNPQPAIFWQREGSNSLLFSYQPPQPFSRLSVSQTG
SLTIADAQRSDAGYYSCQALNIAGSVITKALLEVTDMVSDRPPPVIRQGPANQTAPVDST
VVLGCIATGTPTPTVHWKKDGVVVSSDDSRITQIDTGALQIRYTKLGDTGVYTCLASSPS
GEASWRAYVEVQEFGVVVQPGRPTDPNLIPSAPSKPDVTDVSRTSVTLSWKPNPNAGATP
TSYVIEAFSHASGSSWVTLADHVKTETFVLKNLKPGAVYLFLVRAANAYGLSDPSPITDA
VRTQDTPPTSQGVDHRQIQRELGDVVVNLHNPTILSSSSVRVQWTVEQESPYIQGYKVMY
RASADLGQPGGQWGVFEVRTPGEDGAVVPQLKKGVTYEFKVRPFFDEFQGADSEVKVART
LEEAPSGAPRGVTVTKSDANGTAILVAWQPPSEEEQNGMVQEYKIWCLGNESRYHVNRTV
DGSTFSVLIPSLAPGIRYSVEVAASNGAGPGVKSDVTFFQLDSTGQMMDSPEDQDTLSQI
SDVVKQPAFIAGIGATCWVVLMVFSVWLYRHRKKRSGLSSSYAGIRKVPSFTFTPTVAYQ
RGGESVCSAGRPGLLNMGESVNQPWLADSWPNACANHKDCNINCCNSGNGTSDSNMTTYS
RPADCIANYGSQLEKQQGGLQGPEQAVYSDVDLSNKLNELKTFNNPSLCYVGPGGGPPTP
YEPTPYATTQLIQSSILNKAAAAGAGAPDIRCWNQPPSHLQKTQMQYNIMEQNNRLNKDH
YRGDGPLQGTVPYNQAHEHSTGGSHHSSDRGSSSTSGSQSHKKGTRTPKLPKTNTVNWGE
PLPPPPANPPPSRSCDEYTLPMEKSFNPDAPCPMLTSRMYLHPDEMEEEEAEEGMDRCPT
PPVRGAASSPAGLSYSHQSTATLTPSPQGDQHNGLHNGTDHHRQHAASPPPPPHPLSPPH
TYGYISSPLALDTDGQEEEEEDEEEERDETDAEMAQGHYHQHQNNPQPHQKQPHHQHHPP
PRRLHLRGLEQTPASSTGDLESSVTGSMINGWGSASEEDNGSSGRSSAVSSSDGSFFTDA
DFAQAVANTGDYTAGLRMARFPEDTGPAGRRCQRPSSPLSTDSNMSSAVMQKRPPKRHKQ
HQAQAGHQGHQQRNDFTDDSCMPLKSPSHMSRCGYEVRGATLPRIGSGEGRGRRGSAGGQ
RTREGSVERREVQDKNRTPQGGKGSSKGRQHPGSEDILPYSRPSFPSVQGQSQGQGQSQA
QSSSSSMSSRGSGGRRRDGARRNPTDTLPSIAGFQTQEEELELLES
NT seq
5001 nt
NT seq
+upstream
nt +downstream
nt
atgagaaccatgtgggtcatgtggtcagttgttacggctctccttgtcgccatgctgctc
agtatcgtccattcagagctgcaggaaggagccctcgttccagaaacagacacatgggat
agggccaatgaagatgccacccccacacccccgtctgaacatgaagatgacaactctcta
ggctatacaggatctcgtcttcgtcaggatgactcccctccccggatagtggagcacccc
tctgacctcattgtgtccaagggggagccggccaccctcaactgcaaggcggagggycgt
cctgcccccacggtggagtggtacaaggacggggagcgtgtggagacagaccgggacaac
ccccgttcccaccgcatgctgctgcccagcggctccctcttcttcctacgtatcgtccac
ggccggcgcagcaagccagacgacggcagctacgtgtgtgtggcccgtaactacctgggc
caggccgtcagccacaacgcctcgctggaggtagccattctccgtgatgacttcagacag
aacccagcggatgtgattgtggcagcgggtgagcctgccgtgctggagtgccaaccgccc
cgcgggcatcctgagcccaccatctcatggaggaaagatggtaccaacatcaatgaccgg
gatgagcgcatcacgatccgcggtgggaagctgatgatcaccaacgccaggaagagtgac
gcagggaaatatatctgtgtggggaccaacatggtgggagagagggagagcgagattgcc
gaactgactgtactagagcgcccagggtttgtgaagaggcccagtagtgttatggttctg
gcagatgagagtgtggagttccactgtgaggcgcggggagatccggtccccactgtccgc
tggaggaaagaggatgcagacctgcccaaggggaggtatgagatcctggaggaccacact
ctgagtgtgcgtggtgtggcaccatcagacgagggctcctacacgtgtgttgtagagaac
atggtgggaaaggcagaggcgtccgctacgctgaccgtacacgtcttcactgtgcctcca
gcgttcgccatgcgccccagaaaccaggtggtggcagttgggagaatggtcaccttccag
tgtgaggccactggcaacccccagcctgccatcttctggcagagggagggcagcaatagc
ctgcttttctcctaccagccccctcagcccttcagccgactttccgtgtcccagacaggc
agtctgacaatcgcagacgcccagcgctcagacgccggctactacagctgtcaggccctc
aacatcgctggctccgtcatcaccaaggccctgctggaggtcactgacatggtgtcagac
cgcccccctcccgtgatccgacagggcccagccaatcagacggcacctgtggacagcaca
gtggtcctgggttgcatagcaacaggaacccccactccaacagtccactggaagaaagac
ggggtggtggtgtcctccgatgactcccgcatcactcagatagacacaggagccctgcag
atccgctacactaagcttggagatacaggcgtatacacctgtttggcgtccagccccagt
ggagaggcatcctggagggcgtacgtggaggtgcaagagtttggagtggttgtccagccg
ggtcgacccacagaccctaacctgatccccagtgccccgtccaagcctgacgtgactgac
gtcagccgcacctctgtcacactgtcctggaaacccaaccctaacgctggggccacgccc
acctcctatgtcatcgaggcattcagtcacgcgtcggggagtagctgggtgactctggct
gatcatgtgaaaacagagacctttgtcctgaagaacctcaaaccaggtgccgtctacctg
ttcctggttagagcagccaacgcctacggcctcagtgaccccagccccatcactgatgcc
gtcagaacacaagacacccctcccaccagccaaggagtggaccaccgtcagatccagagg
gaactgggggacgtggtggtcaatctgcacaaccccaccatcctctcctcctcctccgtc
agggtgcagtggacggtggagcaggagtctccgtacatacagggctataaggtgatgtac
agggcgtctgctgatctgggccagccaggtgggcagtggggcgtgttcgaggtgcggacc
cctggagaggacggtgctgtggtgcctcagctgaagaaaggggtcacctacgagttcaaa
gtgcgtcccttctttgatgaatttcagggagcggacagcgaggttaaggtggccaggacg
ctggaggaagcccccagtggagccccccggggcgttaccgtgacgaagagcgatgccaat
gggaccgccatcctggtcgcctggcaaccaccttccgaagaggaacagaacggaatggta
caggagtacaagatctggtgcctgggcaacgagagccgctaccacgtcaaccggacagta
gatggctccaccttctccgtgctgatccccagccttgcgccagggatacgctacagcgtg
gaggtcgccgcgagcaacggcgccggccctggtgtcaagagcgatgtcaccttctttcaa
cttgactctacgggtcagatgatggacagtcctgaggaccaggacacgctgtctcagatc
tcagacgtggtcaagcagccggcgttcatcgcgggcatcggcgccacctgctgggtggtc
ctcatggtgttcagtgtgtggctgtaccgtcaccgtaaaaagaggagcggcctcagcagc
agctacgccggcatacgcaaagttccatcattcactttcactcctacagtggcctatcag
agaggaggagagtctgtctgcagtgctgggagacctgggctgctgaacatgggggagagt
gtaaaccagccgtggctggcagactcctggcccaacgcatgtgccaaccacaaagactgc
aacatcaactgctgcaacagtggcaacggcaccagcgacagcaacatgaccacctacagc
cgcccagccgactgcatcgccaactatggcagccagctggagaagcagcagggcggtcta
caggggcctgagcaggctgtgtacagcgacgtggacctctccaacaaacttaacgagctc
aagactttcaacaaccccagcctgtgctacgtgggcccagggggagggccgcccaccccc
tacgagcccaccccctatgccaccacccagctcatccagtccagcatcctgaacaaggct
gcagcagctggggccggggcccctgacatacgctgttggaaccagcccccctcccacctg
cagaaaacacagatgcagtacaacatcatggagcagaacaacaggcttaataaagaccac
tatagaggagatgggcccctgcaaggcaccgtcccctataaccaggcccacgaacacagc
acaggaggctctcaccacagctctgacaggggcagcagcagtacctctgggagccaaagt
cataagaagggaactcgcactcccaaacttcccaaaacgaacacagtgaactggggtgaa
cctctgccccctccccctgccaaccccccaccaagccggagctgtgatgagtataccctg
cccatggaaaaaagctttaacccagatgccccatgcccaatgcttacctcacggatgtac
ctgcatccggatgagatggaggaagaggaggcggaggaggggatggataggtgtcccacc
ccccctgtcagaggggcagcctcttcccctgcgggtctgtcctacagtcaccagtctaca
gccactctcactccctccccccagggagaccagcacaacggcctacacaacggaacagac
caccacagacaacacgcagccagcccacctcctcccccgcaccccctctcccccccacac
acctacggctacatctccagccccctggcactggatactgacggccaggaggaagaagag
gaggatgaagaagaggaaagggatgagacggatgcggagatggcccagggtcactaccac
cagcaccaaaataacccccagccccaccagaaacagccccaccaccagcaccaccctccc
ccacgcaggctgcacctccgggggttggagcagacgccggcctccagcactggggacctg
gagagctctgtgacgggctccatgatcaacggctggggctcggcctccgaggaggacaat
ggctcgtcaggacgctccagcgctgtcagctcctcagacggatccttcttcacagacgca
gacttcgcccaggctgtggccaacactggagactacacagcaggcctacgcatggccagg
ttcccagaggacacagggccagcagggcgaaggtgccagcgtcccagcagccccctgtcc
acagacagcaacatgagctctgcagtgatgcagaagagaccgcccaagaggcacaagcag
caccaggcccaggctggccaccaaggccaccagcagaggaatgacttcactgacgactcg
tgtatgcccttgaagtctcctagtcacatgtcgcggtgtggctatgaggtgaggggggcc
acgctccctaggattggctctggggagggacggggccggagagggagtgcagggggccag
aggaccagagagggctctgtggagagacgggaggtgcaggacaagaacaggactccacag
ggaggcaaggggagcagcaaaggtcgtcaacacccaggttctgaagacatcctcccgtac
agcaggccctcgttcccctcggtacagggccagagccagggccagggccagagccaggct
cagagctcctccagctccatgtcctcccggggctcagggggacggaggagagatggggcc
cgcaggaaccccacagacacactgcccagcatcgcaggcttccagacccaggaagaggaa
ctagagctgctggagagctga
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