Salvelinus sp. IW2-2015 (Arctic char): 111950571
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Entry
111950571 CDS
T05762
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04142
Lysosome
salp04144
Endocytosis
salp05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
111950571
04142 Lysosome
111950571
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
111950571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111950571
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
salp04147
]
111950571
Membrane trafficking [BR:
salp04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
111950571
Exosome [BR:
salp04147
]
Exosomal proteins
Proteins found in most exosomes
111950571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Motif
Other DBs
NCBI-GeneID:
111950571
NCBI-ProteinID:
XP_023824001
LinkDB
All DBs
Position
LG23:23136743..23185208
Genome browser
AA seq
1694 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGINPANIGFSTLTMESDKFICIREKVGEQAQVVIIDMADPNT
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTV
ALVTDNAVYHWSMEGDSQPIKVFDRHSSLAGCQIINYRTDAKQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAGFAQFKMEGNTEESTLFCFAVRGQAGGKLHIIEVGTPATG
NQPFPKKAVDVFFPPEAQNDFPVAMQISSKQDVVFLITKYGYIHLYDLETGTCIYMNRIS
GETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYITNVLQNPDLALRMAVRNNLAG
AEELFARKFNNLFAGGNYSEAAKVAANAPKGILRTPDTIRKFQSVPAQPGQTSPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKSVDPTLALSVY
LRANVPNKVIQCFAETGQFPKIVXYAKKVGYTPDWIFLLRNVMRISPEQGLQFSQMLVQD
EEPLADITQIVDVFMEYNLIQQCTSFLLDALKNNRPSEGPLQTRLLEMNLMHAPQVADAI
LGNQMFTNYDRAHIAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNFFGSLS
VEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTNSLTELFESFKSFEGLFYFLGSIV
NFSQDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKSLILVVRGQ
FSTDELVAEVEKRNRLKLLLPWLEARIHEGCEEPATHNALAKIYIDSNNNPERFLRENPY
YDSRVVGKYCEKRDPHLACVAYERGQCDQELINVCNENSLFKSLSRYLVRRRDPDLWASV
LLESNPFRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDVNT
SAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGLVKEAIDSYIKADDPSAYME
VVQAADQSGNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQ
QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFA
CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRAYFEELITMLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEEAHLWAELVFLYDKYEEFDNAIITMM
NHPTDAWKEGQFKDIITKVANVELYYKATQFYLEFKPLLLNDLLIVLSPRLDHSRAVNFF
SKVKQLPLVKPYLRSVQNHNNKSVNEALTNLFITEEDYQALRTSIDAYDNFDNISLAQRL
EKHELIEFRRIAAYLFKGNNRWKQSVELCKKDKLYKDAMQYASESKDTELAEELLGWFLT
EDKKECFAACLFTCYDLLRPDVVLETAWKHNIMDFSMPYFIQVMREYLFKVDAIKEKVDK
LETSESLRKEEEQATETQPIVYGPDNLVNGTPQLMLTAGPSVPVPPQQAYGYGYQAPAGY
PQAPQAQPGFGYGM
NT seq
5085 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgcctattcgctttcaggagcacctgcagctccagaacttgggcatt
aacccagccaacattgggttcagcaccctgacgatggagtctgataagttcatctgtatc
cgggagaaggtgggcgagcaggcacaggtggtgatcatcgacatggccgaccccaacacg
cccatccgcagaccaatctctgcagacagcgccatcatgaaccccgcctccaaagtcatt
gcacttaaagacgccgccaaaacccttcagatctttaacattgagatgaagagcaagatg
aaggcccacaccatgactgatgacgtcaccttctggaagtggatctccctgaacacagtg
gcacttgtgactgacaatgccgtctaccattggagcatggagggggactcccagccaatc
aaagtctttgaccggcactccagcctggcgggctgtcaaatcatcaactaccgcactgac
gccaagcagaagtggctgctgctcattggcatctccgcacagcaaaaccgtgtggtgggt
gccatgcagctgtactctgtggacaggaaggtgtcacagcccatcgagggccacgccgca
ggcttcgcccagttcaagatggagggcaacacagaggagtccacactgttctgctttgct
gtgagaggacaggccgggggaaagttgcacatcattgaggtgggcaccccagccacaggg
aaccagccttttccaaagaaagcagtggacgtgttcttccctccagaggctcagaatgac
ttcccagtggccatgcagataagctccaagcaggatgtggtgttcctcatcaccaaatat
ggctacatccacctgtatgacctggagactggcacctgcatctacatgaacaggatcagc
ggagagaccatctttgttacggcccctcacgaagccaccgccggcatcattggggtcaac
aggaaaggacaggttctgtcagtgtgtgttgaggaggagaacatcatcccttacatcacc
aatgtgctgcagaacccagacctggccctgcgcatggccgtccgtaacaacctggccggg
gccgaggagctgttcgcgcgcaagttcaacaacctgtttgctggcggaaactactctgaa
gctgccaaggtggccgccaacgcaccaaagggtatcctgcgtactccagacaccatccgt
aagttccagagtgtgccagcccagccgggccagacctctcccctgctgcagtactttggc
atcctgctggaccagggccagctcaacaagtttgagtctctggagctgtgcaggcccgtc
ctacagcagggacgcaagcagctgctggagaagtggctcaaagaggacaagctggagtgt
tctgaggagctgggggacctggtgaagtcagtggaccccaccctggctctctccgtctac
ctgagggccaacgtacccaacaaggtcatccagtgcttcgctgagaccggacaattcccc
aagatagtcrtgtacgccaagaaggtgggctacactccagactggatcttcctgctgagg
aatgtgatgaggatcagtccagaacagggcctgcagttctcccagatgcttgtccaggac
gaggagcctctggctgacattacacagatcgtggatgtctttatggagtataacctgatc
cagcagtgtacctccttcctattggacgccctgaaaaacaacaggccttctgagggaccg
ctgcagacacgcctcctggagatgaacctcatgcacgccccacaggttgctgatgccatc
ctgggcaaccagatgttcaccaactacgaccgtgcccacatagcccagctgtgtgagaag
gctggtctgctgcagagagctttagagcattacaccgacctgtacgacatcaaacgggcc
gtggtgcacacacacctgctcaacccagagtggctggtgaacttctttggctccctctca
gtggaggactctctggagtgcctgagggccatgttgtctgccaacatccgtcagaacctg
cagatctgtgtccaggtggcttccaagtaccacgagcagctctccaccaactccctaacg
gagctcttcgagtccttcaagagtttcgagggtctgttctacttcctgggttccattgtt
aacttcagccaggacccagaggtccacttcaagtacatccaggcagcctgcaagacggga
cagatcaaagaggtggagaggatctgccgagagagcaactgctacgaccccgaacgagtc
aagaacttcctcaaggaggccaagctgaccgaccagctcccactcatcattgtgtgtgac
cgcttcgactttgtccatgacctggtcctctacctgtaccgtaacaacctgcagaaatac
attgagatctatgtgcagaaagtgaaccccagccgtctgccagtggtgataggagggctt
ctggatgtggactgttctgaggacgtcattaagagtctgatcctggtggtcagaggacag
ttctccactgacgaactggtggctgaggtggagaagaggaaccgactgaagcttctcctc
ccctggctggaggcccgtatccatgagggctgtgaggagcccgctacccacaatgccctg
gccaagatctacatcgacagcaacaacaaccctgagcgcttcctgcgtgagaacccctac
tacgacagccgcgtggtgggcaagtactgcgagaagagggaccctcacctggcctgcgtt
gcctacgagagaggacagtgtgaccaggaactcatcaacgtgtgcaatgagaactccctg
ttcaagagtctgtctcgctacctggtccgtcgcagagacccggacctgtgggccagcgtg
ctgctggagagcaaccccttcagaagaccactcattgaccaggtggtgcagacagccctg
tctgagacccaggacccagaggaggtgtcagtcacagtaaaggccttcatgactgcagac
ttgcccaacgaactcattgagctgttggagaagatcgtactggataactctgtcttcagt
gaacacagaaacctgcagaacctgctgatcctgacggccatcaaggcagaccggacccgt
gtgatggagtacatcaaccgcctggacaactatgacgccccagatatcgccaacatcgcc
atcagcaacgagctcttcgaggaggcctttgctatcttcaggaagtttgacgttaacacc
tctgccgtgcaggttctcattgagcacattgggaacctggaccgggcctatgagtttgcc
gagcgctgcaacgagccagctgtgtggagccagctggccaaggctcagctgcagaagggc
ctggtcaaggaggctatcgactcctacatcaaggctgacgacccctctgcctacatggag
gtggtacaggctgccgaccagagtggtaactgggaggacctggtgaagttccttcagatg
gctcgtaagaaggcccgggagtcctatgtggagacagagctcatctttgccctggccaag
accaaccgcctggctgagctggaagagttcatcaatggacccaacaacgcccacatccaa
caggtcggcgaccgctgttacgacgagaaaatgtatgacgcggccaagttactgtacaac
aacgtgtccaacttcggccgactggcgtccaccctggtgcacctcggggagtaccaggcg
gcagtggacggggcgcgcaaggccaacagcactaggacctggaaggaggtgtgctttgcc
tgcgtggatggaaaggagttccggctggcccagatgtgtggcctccacatcgtggtccat
gctgacgaactggaggagcttatcaactactaccaggaccgtgcttactttgaggagctg
atcaccatgctggaggcagccctggggctggaacgggcgcacatgggcatgttcaccgag
ctggccatcctctactccaagttcaaaccccagaagatgagagagcacctggagctcttc
tggtccagagtcaacattccaaaggttctgcgggcggcagaggaggcccacctgtgggcg
gagctggtgttcctgtacgataagtacgaggagtttgacaatgccatcatcaccatgatg
aaccaccccaccgacgcctggaaggagggccagttcaaagacatcatcaccaaggtggcc
aacgtggagctgtattacaaagcaactcagttctatttggagttcaagccgttgttactg
aatgacctgctcatagtgctgtcccccagactggaccactcccgtgctgtcaatttcttc
agcaaggtgaaacagctgcccctggtcaagccctacctgcgctcagtacagaaccacaac
aacaagtctgtcaatgaagcacttaccaacctcttcatcacagaggaggactatcaggct
ctgaggacctctatagatgcctatgacaactttgacaacatctcgcttgcccagcgcttg
gagaaacacgagctgattgagttcaggaggatcgctgcctacctcttcaagggaaacaac
cgctggaaacagagtgtggagctctgcaagaaggacaaactctacaaggatgccatgcag
tacgcgtcagagtccaaggacacagagttggctgaggagctgctgggctggttcctgacg
gaggacaaaaaggagtgctttgctgcctgcctcttcacctgttacgacttgctgaggcca
gacgtggtgctggagacggcctggaagcacaacatcatggacttctccatgccctacttc
atccaggtcatgagagagtatctcttcaaggttgatgcaattaaggaaaaggtggacaag
ctggagacctctgagtccctaaggaaagaggaggagcaggcgacagagacacaacccatt
gtctatggtcctgataacttagtaaatggcacaccccagcttatgctgactgctggcccc
agcgtgcccgtgcccccccagcaggcctacggctacggttaccaggctcctgcaggctac
ccccaagcacctcaggcccaaccaggctttggctacggcatgtaa
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