Salvelinus sp. IW2-2015 (Arctic char): 111950952
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Entry
111950952 CDS
T05762
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013
Nucleocytoplasmic transport
salp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
111950952
03015 mRNA surveillance pathway
111950952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111950952
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
111950952
mRNA cycle factors
P-body specific factors
111950952
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
111950952
NCBI-ProteinID:
XP_023824675
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Position
LG3:12888437..12910367
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AA seq
1281 aa
AA seq
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MLAEGKRSLNMDEKEVSSFSNKEKDREGDRRPASSRDKVKDESKMSGKKDIGKAAEEKRR
RLEEDKRKKEEKERKRKEEEKQKAEEEQRKKEEEEKKQQEEEERKVQEEEAKRQREEEAA
QLKEKEEGHQLHQEAWERHQCRKELRIRNQNAHEGRPEETFFSRLDSSLKKNTAFVKKLR
TLTEQQREALSNDFGSLNLSKYIGEAVGSVVEAKLKISDVGCAVHLCSLFHQRYAEFAPL
LLQAWKRHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQLKSIIGTDR
ETHTHVSVVISFCKHCGDDIAGLVPRKVKAAREKFDLAFPPSEIINTEKQQPFQNLLREY
FTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLLANTQSLADF
LDENMPELPLDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYENMVDLKAFVP
AILFKDNEKGKDKEEAAGKEAKDAAATTEELELELEALDIADDPLELDGPDEAENEAELA
KKLLDEQGKDEEQEDEEASTGSHLKLIVDAFIQQLPNCVNRDLIDKAAMDFCMNMNTKSN
RRKLVRALFTVPRQRLDLLPFYSRLVATLHPCMSDVADDLCSILKGDFRFHIRKKDQINI
ETKNKTVRFIGELAKFKLFSKTDTLHCLKMLLSDFSHHHIEMACTLLETSGRFLFRSPDS
HLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKKRPPLQEYIRKLLY
KDLSKVTTEKVLRQMRKLPWQDPESKGYLICCMVNIWNIKYNSIHCVANLLAGLVAYQED
VGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLFSFISFG
VNPDGSPSPLDPPEHLFRIRMVCTLLDTCGQYFDRGSSKRKLDCFLIYFQRYIWWKKSVE
VWSAEHQFPIDIDYMISDTLELLRPKMKLCISLEDSTRQVTELEREFLVKLGLAMDGQKD
GRPSSAMGSEGEALDEDDDDDDEEGGADTEEQSGNESEMNEPEEEEGSENEEEEREEEEE
ENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALDKMMLENLQQRSGEAV
KVHQLDVAIPLQLKSQLKKGPGGPVCSGEGDADISDTMQFVMLTRKGNKQQFKILNVPLS
SHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMASLAQRPAPANTNRERRPR
YQHPKGAPNADLIFKTGGRRC
NT seq
3846 nt
NT seq
+upstream
nt +downstream
nt
atgcttgctgagggcaagagatcattaaacatggatgagaaagaggtgagctcctttagt
aacaaggagaaagacagagagggtgatagacggcccgcctcctcccgggataaagtgaag
gatgagtcaaagatgagtggcaagaaagatatcggtaaggccgcagaggaaaagaggagg
agacttgaggaggacaaaagaaagaaggaagaaaaggagcggaaacggaaagaggaggag
aaacagaaggcagaggaggagcagaggaagaaggaggaagaggagaagaagcagcaggag
gaggaggagaggaaagttcaggaggaggaggccaagagacagcgtgaagaggaggcagct
caactcaaggagaaggaggagggtcaccagctccaccaggaggcctgggagcgccaccag
tgccggaaggagctgcgcatccgcaaccagaacgcccacgagggccgtcccgaggagacc
ttctttagccgccttgactccagcttgaagaagaacacggcctttgtcaagaagctgcgc
acgctcactgagcagcagcgcgaagccctttccaatgacttcggctcgctcaacctcagc
aagtacatcggcgaggcggtgggctcggtggtggaggccaagctgaagatctctgatgtg
ggctgcgccgtgcacctgtgctccctctttcaccagcgctacgctgaattcgccccactg
ctcctccaggcctggaagaggcactttgaggcgcgcaaggaggagaaggcgcccaacgtg
agcaagctgcgcaccgacctgcgcttcatcgcagagcttaccatcgtgggcctgtttacg
gacaaggagggcctttcgctcatctacgagcagctgaagagcatcatcgggacagaccgc
gagacacacacgcatgtgtcggtggtcatcagcttctgtaagcactgcggggacgacatc
gcgggcctggtgcctcgcaaagtgaaggctgcacgggagaaatttgacctggccttccct
cccagtgagatcatcaacacggagaagcagcagcccttccagaaccttctgagggagtac
ttcacctcgctcaccaagcacctgaagaaggaccaccgcgagttgcagaacatcgagagg
cagaacaggcgtatcctccactccaaaggggagctgagtgaggacagacacaagcagtat
gaggagtttgctacgtcctaccagaagttgctggctaacacccagtctctggctgacttt
ctggatgagaacatgccagaacttccactggacaagactgtgcaggaagagcacggccct
ggcattgacatcttcacccctgggaagcccggggagtatgacctggaggggggcatctgg
gaggacgaggatgccaggaacttctacgagaacatggtggacctgaaggccttcgtcccc
gccatcctgttcaaagataacgagaagggcaaggacaaagaggaggctgctggtaaagag
gctaaagatgctgcggccaccacagaggagttggagttggagctcgaggctctagacatc
gctgatgaccctctggagctggatggacctgatgaggcagagaacgaggcagagcttgcc
aaaaaactgttggacgagcaaggtaaagatgaagaacaagaggatgaggaggcaagcacc
gggtcccacctgaagctcatcgtggacgccttcatccagcagcttcccaattgtgtcaac
agagacctcatagacaaggctgccatggatttctgcatgaacatgaacaccaagtcaaac
aggaggaagctggtccgggctctcttcaccgttcccagacaaaggttggatctgctgccc
ttttactcccgtctggtggccacccttcacccctgcatgtcagatgtggccgatgacctg
tgctccatactcaaaggagacttcaggttccatatccggaagaaggaccagatcaacatc
gaaacaaaaaataaaactgtaaggtttatcggggagctggcaaagttcaagctgttctct
aaaacggacactctgcattgtctgaagatgctgctgtcagacttctcccaccaccacata
gagatggcctgcaccctgctggagaccagtggacgcttcctcttcagatcccccgactcc
cacctccggaccagcgtccttctggagcaaatgatgcgtaagaagcaggcacagcacctg
gatgctcgctacgtgaccatggtggagaatgcctactactactgcaaccccccgcccatg
gagaagactgtcaggaagaagaggcccccgctgcaggagtacatccgcaaactgctctac
aaggacctctccaaggtcaccacggagaaggtgttgaggcagatgcgtaaactcccctgg
caggacccagagtctaaaggctacctgatctgttgcatggtcaacatctggaacatcaag
tacaacagcatccactgtgtggccaacctgctggccggccttgtggcctaccaggaggat
gtgggcatccacgtggtggatggggtcctggaggacatccgcctgggaatggaggtgaac
cagcccaagttcaaccagcgtcggatcagcagtgccaagtttctgggggagctctacaac
taccgcatggtggagtcagcggtcatcttccgcaccctcttctccttcatctcgttcggg
gtgaacccggacggcagccccagccccctggacccccccgagcacctgttccgcatccgc
atggtctgcaccctgcttgacacctgcggacagtactttgaccgcggctccagcaagagg
aagctggactgcttcctcatctacttccagaggtatatctggtggaagaagagtgtggag
gtgtggagtgcggagcaccagttccccatcgacattgactacatgatcagtgacaccctg
gagctcctccggcccaagatgaagctctgcatctccctggaagactccacacgacaggtc
accgagttggagagggagttcctcgttaaactgggactggccatggatggacagaaggac
ggccggccctcgagtgccatggggagtgaaggcgaggctctagacgaggatgatgacgat
gacgacgaagagggaggggcggacacagaggaacagtctggcaatgagagcgagatgaac
gagccagaggaagaagaagggtctgagaatgaggaagaggagcgggaggaagaggaggag
gagaacactgactatctgaccgactccaacaaggagaacgagacggacgaggagaacaat
gaggtgaccatccgtggtggcggtctgaagcatgtggcatgtgctgaggatgaggacttc
atccaggctctggacaagatgatgctggagaacttgcagcagcggagcggggaggcggtg
aaggtgcaccagttggacgtggccatccccctgcagctgaagagccagctgaagaaaggc
cctggcggacccgtctgctctggggagggggacgcagacatctcagacaccatgcagttt
gtcatgctcacgcgcaagggcaacaagcagcagtttaagatcctgaacgtgcctttatcc
tcccacctggctgccaaccacttcaaccagcagcaggcagagcaggaggagaggatgagg
atgaagaagctcactctggacatcaacgagagacaggagcaagaagactaccaagaaatg
atggcgtctctggcccagcggcccgctccggccaacaccaaccgggagcggcgcccgcgc
taccaacaccccaaaggggcacccaacgccgacctcatcttcaagaccggaggaaggaga
tgctga
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