Salvelinus sp. IW2-2015 (Arctic char): 111951599
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Entry
111951599 CDS
T05762
Symbol
ddx43
Name
(RefSeq) probable ATP-dependent RNA helicase DDX43 isoform X1
KO
K17043
ATP-dependent RNA helicase DDX43 [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111951599 (ddx43)
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111951599 (ddx43)
Spliceosome [BR:
salp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
111951599 (ddx43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_1
MOEP19
ResIII
KH_2
SNF2-rel_dom
KH-I_KHDC4-BBP
CMS1
Motif
Other DBs
NCBI-GeneID:
111951599
NCBI-ProteinID:
XP_023825534
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All DBs
Position
LG25:12724247..12755649
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AA seq
698 aa
AA seq
DB search
MSDWEEENDVPTPAITAPPTDWKSSWKGSAKENVCFGVGNAGGFRAPRGRGDPNGSHCQN
WRDSYGCNNDRVFSRSGDRYACRGERGGRGADGSASTPPVTFTVENTSIGRVIGRGGAKI
RELEETSGARIKISKGDYEGEVQIFGSSKVQQKAREMIEELVAGDNGPGGFRREPGCDGG
FGVRGGRFGGAGGGGRSSSIWSAAALQASVEDNPPQAIDWVSMRANRHKYEELKWQDLPP
LKKDFYFESEIVASRCEEEVKAWRKANNDIFVDDLKEGEGEKRSFPNPVVTFDEAFLRYP
GIMENIVRVGFAKPTPIQSQAWPMSLKGDDLIAIAQTGTGKTLAYLLPGFIHMDGQPVKR
DKQDGPGMLVLTPTRELALQIESECNKYSYKGFKCVCVYGGGDRRAQIKAISAGVDIVIA
TPGRLNDLQMNELINLRSITYLVLDEADRMLDMGFEPQIMKILLDVRPDRQTMMTSATWP
TGVRRLAKTYLKNPMMVYVGTLDLAAVNTVEQTVLFCQDEEKKAYLFNFVHNMEPEDKVL
IFVGKKIMCDDLSSDMCLRGLAVQSLHGDREQCDREEALKDFKESVVRILVATDLASRGL
DVTDITHVFNFDFPRNIEEYVHRVGRTGRAGRSGASITLVTRGDWRKAADLIPILERSGQ
EVPDELVLMAERYEKHKREKEMYGPRGGGGRGVRDRRV
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgtcagactgggaggaggaaaacgatgtacctacgcctgctattacagcaccacccaca
gattggaagtcttcgtggaaagggagtgcgaaggaaaatgtgtgttttggggtgggaaat
gcaggtggtttcagagcgccaagagggagaggggatcccaacggttcgcattgtcaaaat
tggagggacagctatggttgcaacaacgaccgcgtgttctccagaagtggagatcgttat
gcctgtagaggtgaacgcggaggtcgtggcgcagacggatcggcttcaactccgcccgtc
actttcacggtggaaaatacctcaattggaagggttataggtcgcggaggagctaaaata
cgtgaacttgaagaaacaagtggtgcacgaatcaagatcagcaagggggactatgagggt
gaggtgcaaatctttgggagcagcaaggttcagcagaaggcccgagagatgatcgaggag
ttggtagccggagacaatggccctgggggattccgcagagaacctgggtgtgatggagga
tttggggttagaggtggaagatttgggggtgctggtggcggaggcaggagcagctccatc
tggtcagctgcagccctgcaggcgtctgtggaggacaatcctccacaggccatcgactgg
gtctccatgagggccaaccggcacaaatacgaggagttgaagtggcaggatctcccacct
ctgaagaaggatttctactttgagtcagagattgtagccagtcggtgtgaagaggaagta
aaggcatggaggaaagcgaataacgatatctttgtggatgacctgaaggagggagaaggg
gagaagcgttcctttcccaaccctgtggtcacgttcgacgaagccttcctgcgctatcct
gggatcatggagaatattgtcagagtcggcttcgccaagccaactcctatccagtctcaa
gcctggcccatgtcgctgaaaggagatgacctgatcgcgatcgcccagacaggcacaggg
aagacactggcctatctcctacctggcttcattcacatggatggccagcctgtaaaacgt
gataagcaggacggccctggtatgcttgttctgactcccactagagagctggctctgcag
attgagtcagagtgcaacaagtacagctacaagggcttcaaatgtgtgtgtgtctatgga
ggtggagaccgcagggcccagatcaaagcgatctcagctggagtagacattgtgatcgcc
acgcctggccggcttaacgacctgcagatgaacgagctgatcaacctgcgttccatcacc
tacctggtgctggatgaggcagacaggatgcttgacatgggctttgagcctcaaatcatg
aaaattcttctggacgtccgtccggacaggcagactatgatgaccagtgccacctggccc
acgggagtgaggcgattggccaagacgtacctgaagaaccccatgatggtgtatgtggga
actctggacctggctgctgtgaacacagtggagcagactgttctcttttgtcaagacgag
gagaagaaggcctatctctttaacttcgtccacaacatggagcctgaggacaaagtgctc
atcttcgtaggcaagaagataatgtgtgacgacctgtccagtgacatgtgtctgcggggc
ctggcagtacagagtcttcatggggaccgggaacagtgtgaccgcgaggaggcgctcaag
gacttcaaagaaagtgttgtccgtatcctagtggccactgacctggcctcccgagggctg
gacgtcacagacatcacacacgtcttcaactttgacttcccacgcaacattgaagagtat
gtgcatcgcgtgggtcgcacgggccgggcaggacgctctggggcctctatcaccttggta
acgagaggagactggaggaaggctgctgacctgatccccatcctggagaggtctggacag
gaggtacctgatgagctggtgctcatggcggagagatacgagaagcacaagcgagagaag
gagatgtacggccccagaggaggagggggaagaggagtaagagacaggagagtctaa
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