Salvelinus sp. IW2-2015 (Arctic char): 111951675
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Entry
111951675 CDS
T05762
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111951675
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111951675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
111951675
NCBI-ProteinID:
XP_023825657
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Position
LG3:16935894..17076044
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AA seq
670 aa
AA seq
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MKVAETRGAHKCTEKMEREAASLKRRYCCTTVMNIISSLLSVASLAFCILLSLQTSEIKD
RVLDLETRHGEHVFHRVPGFSVDQFNSLIQERVDELLSQRSYEHFAKIRIARQVSPSPDC
NCPPGSPGKRGRRGRNGEPGPPGTPGPQGEKGDQGDQGPRGLSGLPTLAALQSNQILTVK
MVFPKINHGFLSADQQLIKRRLIKGDQGSAGPPGPPGPPGSPGPRGPPGDTGKDGPRGVT
GLPGEPGTTGDLGLMGPLGPPGIPGVDGLKGEMGERGEKGDLGEDGQRGEGGEKGDAGSS
AAGIKGEPGEPGHGGAKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGELG
PPGKGERGETGPPSQKGGPGEAGNPGPRGSKGETGDKGVLGSMGPRGPPGQKGDQGATEI
IDYNGNIQEALQKITTITVTGPPGPPGLSGTAGIKGDQGMPGLPGLDGEMGFKGSKGDMG
IPGTSGEKGTVGLPGLPGVNGLKGDKGDSGLSGPQGPSIIGQPGAPGLHGPPGPMGPHGF
PGPKGEAGNHGLKGVRGGSGYKGDRGPLGLPGASGLDGKPGIRGMDGPGGPSGPAGPKGD
IGERGAAGEPGPRGPYGLHGAAGTPGLDGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGPD
GLPMPGCWQK
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atgaaggttgcagagaccaggggagcacataagtgcactgaaaaaatggagagagaagcg
gcatctttgaagcggcgatattgctgcacaacagtcatgaacattatctcgtctttatta
tctgtggcgtcccttgccttttgtatattattaagtctgcaaacatcagagatcaaggac
agggtcctggatttggaaactagacatggcgagcatgtctttcaccgggtccccggcttt
tcggtggatcagtttaattcattgattcaagagagagtggatgagctcctgtcacaacgc
tcttatgaacatttcgccaagatacggattgcccgacaagttagccctagtcctgattgc
aactgtcccccaggctcgccaggaaagcggggaagaagaggccggaatggtgaacctgga
cctcctggtactcctggtccacagggtgagaagggggatcaaggtgaccaaggaccgcgg
ggattgtctggtctccctacactggctgctttgcagagcaatcagatcctgactgtcaag
atggtcttccctaagatcaatcatggctttctttctgctgaccagcagctcataaagcgg
cggcttattaagggagatcagggttcagcaggtccaccaggacctcctgggcccccaggt
tcccctggccccagagggccaccaggggacacaggcaaggatgggccccggggagtgaca
ggtctgccgggagaacctgggacaacaggagacctaggactgatgggtccccttgggcct
cctggcatcccaggtgttgatgggctgaagggtgaaatgggagagagaggtgaaaagggt
gacttgggagaagatggtcaaagaggtgaaggcggggagaagggtgatgcgggctcctct
gcggcaggcatcaagggtgaaccaggagagccaggacatgggggagcaaagggagagcca
ggacttccagggcttcctggacttcccgggattaagggtgagcctggattcctaggacca
cagggagaaccagggctcccaggactaccaggaaccaagggtgagagaggggaactgggc
ccaccaggcaaaggagagcggggcgagactggaccacccagtcaaaagggagggccagga
gaggcagggaacccaggccctagaggttcaaagggagaaacaggagacaagggagtcctg
ggctccatgggaccaaggggaccccctgggcagaaaggtgaccaaggagccactgaaatc
attgattacaacggtaacatccaagaggctttacagaagattaccactattacagtgacg
ggtccccctgggcctcctggactatcaggaacagcgggaatcaagggagatcaaggcatg
cctggcctccctgggctggatggtgaaatgggttttaaaggttccaaaggagacatggga
atccctggcacatctggagaaaaaggaactgttggcttacctggtttaccaggcgtcaat
ggattgaaaggagataagggtgattccggtctgtctggtcctcaagggccctcaattatt
ggccaacctggagcacctgggctccatggacccccaggtcccatgggaccccatggattc
cctggaccaaagggggaggctgggaatcatggtctgaagggagtgcgcggggggtcaggg
tacaagggggacagaggacccctgggcctccccggagcctccggcttggacggcaagcca
ggaattaggggtatggacgggcctgggggtccctccggtccagccgggccaaagggggac
ataggtgagagaggagctgcaggtgaacccgggccaagggggccttatggacttcatgga
gcggctggaacacctggccttgatggggagaagggaaagaagggcaaaaaagggcctaag
ggggagaaaggagaacagggtgcccctggattagatgcaccctgcccattgggcccagac
ggactaccaatgcctggttgttggcagaagtga
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