Salvelinus sp. IW2-2015 (Arctic char): 111951735
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Entry
111951735 CDS
T05762
Name
(RefSeq) putative ATP-dependent RNA helicase DHX57
KO
K13026
ATP-dependent RNA helicase DHX57 [EC:
5.6.2.6
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
salp03012
]
111951735
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
111951735
Translation factors [BR:
salp03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
111951735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
RWD
HA2_C
HA2_N
zf-CCCH_4
zf-CCCH
Torus
NB-ARC
nSTAND3
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
111951735
NCBI-ProteinID:
XP_023825706
LinkDB
All DBs
Position
LG25:complement(22825296..22839960)
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AA seq
1455 aa
AA seq
DB search
MSGRRRGQPNRGGGRFNKPRGGGGRGRGGGGGGGGGGGGGGGKAASGGWDDGDDFSLDFG
PSRSTRPTSGRGRGGSSRGSGGSSRGRGGRGRSTGGGRGRGGGDRGRGKVNGRGLPKSLI
SERPRPRLLDEDRPRLRPEMMGNMPMQKIFMTNENQEQVKELLRELQTQDYDDEPYDEED
EYEEEEEYDELDYREEGQFWNTHDEPVESAESPVYDPDSEDERRPTPEAVIGLFAIGKLC
RYGFDRERSKQALEAGVGEVGATMEQLLLQVFSERYGPKAVSPDGLQGAPMDECLTQRQE
EALALTAIYGDRFTERIANSVWTVTLDPDFLADIAGGKQKASARTDDSVQIRDVCSFYLK
GAGCRFGAKCKYKHQMPTKGTASGPQDPVGASQPGFSSYSSPEYELEVRFPKGNRYPFQA
PVVAFSTNDETIGAAARLSVTEHLFGEALAAAKEGEPVVYTLITCCEDEATMKELLSVTH
HKYSSLPPVVVAPPPAAVALTKSKSGRSNTALHVEGKSSTNTNRTTPTNSTANSRTAPTN
NSTATGRTAPTNNSTANSRTAPTNNSTANSRTAPTNRTSSHRIQQATEDLEEEEDDEEEV
VVPETESYVNLRKKMVKRHEERTGSQQKENAKLCREFRTKQSSRRFTSMLQQRQKLPAWN
EKENILDLLDNCQVLVVSGMTGCGKTTQIPQFILDASLSGPTDQVANIICTQPRRISAIS
VAERVAQERAERLGNSVGYQIRLETVRVSGTQCCTHAHMHNLAFYRVFFPLCSSSSSQAH
SVHIPGRTFPVDQFFLEDAIAKTRYVIEDGSPFMRSGGGKDKSSSGSKGVRGGAKDPVDQ
LGDDMWSFMNLQKKDFIKDSIPDQQLSLQELAVRYKDTKKSVLKTISAMDLDKINMDLVE
SVLEYIVDGDHSYPPGAVLVFMPGLAEIKTLYEQLQSNRMFNNRNRARCVVYPLHSSLSN
EEQQAVFKRPPEGVTKIIISTNIAETSVTIDDVVYVVDSGKMKEKSYDASKSMESLEESW
VSRANALQRRGRAGRVASGVCFHLFTSHCFQHQLAEQQLPEIQRVPLEQLCLRIKILDVF
AERPLDSVFSRLIEPPAMGSLDAAKQRLQDLGALTADEKLTPLGYHLACLPVDVRIGKLM
LFGAIFRCLDPALTIAASLAFKSPFVSPWDKREEANEKKLNYALANSDHLALLQAYKGWC
GAAKNGNQAGFQYCRENFLSSRGLQEIASLKRQFTELLSDIGFVKEGLKARVIERMAAKG
TDGIMEATGREANLNSDNIRLMSAMLCAALYPNVVQVRSPHEKFKQTSKGAVKMQPKADE
LRYMTKNDGCVHVHPSSVNYTVRHYDSPYLVYHEKVKTSRVFIRDCSMVSVYPLVLFGGG
QVNVELQKGEFVISLDDGWIRFAAASHQVAELVKELRWELDQLLEDKIRNPSMDLCTCPR
GSRIIHMIVKLITTQ
NT seq
4368 nt
NT seq
+upstream
nt +downstream
nt
atgagtggaagaaggagggggcagcccaacagaggtggagggcgatttaacaagcccaga
ggaggaggagggagaggaagagggggaggaggaggaggaggaggagggggaggaggagga
ggtggaaaggcagcgagtggtggctgggatgacggtgacgatttcagccttgattttgga
cccagtcgctcaaccaggcccacctcgggcagaggaaggggtgggagcagccggggcagc
gggggtagcagcagaggtagaggaggaaggggaaggagcactggtggagggaggggtaga
ggtggcggagataggggtaggggaaaggttaatggtaggggtttacccaagtccctaatt
agcgagagacctcggcctaggctgctggatgaagacaggcctcgcctcaggcctgagatg
atgggcaacatgcccatgcagaagatcttcatgacaaatgagaaccaggagcaggtgaaa
gagctgctgagagagctgcagacccaggactacgacgacgagccatatgatgaagaagat
gagtatgaggaagaggaggagtatgatgagctggattaccgggaggaagggcagttctgg
aacacccatgatgagcctgttgagagtgcagagagccccgtctatgatcctgactctgag
gatgaacggcggcccactcccgaagcagtcataggactgtttgccataggaaagctctgc
aggtatggtttcgaccgggagcgcagcaagcaggccctggaggcaggtgttggggaggtg
ggagcaaccatggaacagctgctcctccaggtcttctccgagcgctacggccccaaagct
gtctcccccgatggcctccaaggggcgcccatggacgagtgcctcacccagagacaggag
gaggccttggccctcaccgcaatctacggcgaccgcttcaccgagcgcatcgccaacagc
gtttggactgtcactttggaccctgacttcctagccgacattgcaggaggaaaacaaaag
gcatctgctcgcaccgacgactccgttcaaattagggacgtctgcagcttctacctaaag
ggtgccggctgcaggtttggagctaagtgcaagtataagcaccagatgcccaccaaggga
acagcttcgggccctcaagaccccgtgggagccagccaacctgggtttagcagctactcc
tctccagagtatgagctggaggtccgcttccctaaagggaaccgctaccccttccaggcc
cctgtcgtagccttcagcactaacgatgagaccataggggccgcagccaggctgagtgtc
acagagcatctgttcggggaggccttggctgcagcgaaggagggtgagcccgtggtctac
accctgatcacttgctgcgaggacgaggccaccatgaaggagctgctgtcagtcacgcat
cataaatacagctccctgccccctgtggtagtggctccaccccctgctgctgttgccttg
acgaagagcaagagtgggaggagcaacacggcattacatgtggagggcaagagtagtacg
aacaccaacagaactaccccaactaacagcaccgccaacagcagaactgccccaactaac
aacagcaccgccacaggcagaactgccccaactaacaacagcaccgccaacagcagaact
gccccaactaacaacagcaccgccaacagcagaactgccccgactaacagaacaagcagc
cacaggatacagcaggccacagaagacttggaggaggaggaggatgatgaggaagaagta
gtggttcctgagaccgagagctatgtcaacctgaggaagaagatggtgaagagacatgaa
gagaggacagggagccagcaaaaggagaacgccaaactgtgtcgagagttcaggacaaaa
cagtcatccaggcgcttcacctccatgttgcagcagagacagaagctgcctgcttggaat
gagaaggagaacatcctggacctgttggacaactgccaggtgctggtggtcagtggcatg
actgggtgtggtaagaccacccagatccctcagttcattctggatgcatctctgagtggg
cctactgaccaggtggctaacatcatctgcacccagccccgccgtatctctgccatctcc
gtggctgagagggtggcacaggagcgggcagaacgcctcggtaactcagtgggctaccag
atccgcctggagaccgtcagggtcagtggaactcaatgttgtacacatgctcacatgcat
aaccttgcattctaccgggtcttctttcctctttgctcttcgtcgtcgtctcaagcacac
tctgtccacataccaggacgcactttccctgttgaccagtttttcctggaagatgcaatt
gccaaaacccggtatgtgattgaggatggcagtccgttcatgcgctcgggcggggggaag
gacaagtcctcatcaggcagtaagggggtcagagggggggccaaagaccccgtggaccag
ctgggagacgacatgtggtccttcatgaacctccagaaaaaagacttcattaaagactcc
atccctgaccagcagctcagcctgcaggaactcgctgtccgatacaaagacaccaagaaa
tctgtcttgaagaccatatctgccatggacctggataagatcaacatggacctggtggag
agtgtgctggagtatattgtggacggggaccacagctaccctccaggtgctgtgttggta
ttcatgccgggcctggctgagattaagactctttatgagcagctccagtccaacaggatg
ttcaacaaccggaacagagccaggtgtgtggtgtacccactccactcgtccctgtctaac
gaggagcagcaggctgtgttcaagcgtccaccagagggcgtcacaaagatcatcatctcc
accaacatcgctgagacctccgttaccatcgacgacgtggtctacgtggtagactcaggc
aagatgaaggagaagagttacgacgcctctaagagcatggagagcctggaggagtcgtgg
gtgtcccgtgccaacgccctgcagaggagagggcgagcgggccgcgtggcctcaggggtg
tgcttccatctcttcaccagccactgcttccaacaccagctggcagagcagcagctgcca
gagatccagagagtccccttggagcagctctgcctcaggattaagatcctggatgtgttt
gcggagcggccattggattctgtgttctctcggctcattgagcccccggccatgggcagt
ctggatgcggccaagcagcgtttgcaggacctgggggctctgactgccgacgagaagctc
acccctctgggctatcacctggcctgtctgcctgtggacgtccgcattggcaaactcatg
ctgtttggtgccatctttcgctgcctggaccctgccctcaccatcgctgccagcctggcc
ttcaaatcccccttcgtgtctccttgggataagagggaggaggccaatgagaagaagctg
aattatgccctggccaacagtgaccatctggccctgctgcaggcatacaagggctggtgt
ggtgcagccaaaaacgggaatcaggccgggtttcagtactgcagagagaacttcctgtct
agccggggcttacaggagatagccagtctgaagaggcagtttacagagctgctgtctgac
attggcttcgtcaaggagggactgaaggctagagtcattgagagaatggctgccaaaggg
actgatggtataatggaggctacgggccgtgaggccaacctcaactctgacaacatcagg
ttgatgtctgccatgctctgtgctgccctgtatcccaatgtagtacaggtgaggtctcct
catgagaagttcaagcagaccagtaaaggagcggtgaagatgcagcccaaagcagacgag
ttgcgctacatgaccaagaatgacggctgtgtccacgtacacccctcctccgtcaactac
acggtgcgccactacgacagcccctacctggtgtaccatgagaaggtgaagacaagccgt
gtgttcatcagagactgcagcatggtgtcggtgtaccccttggtgctgtttgggggggga
caggtcaacgtggagttgcagaagggagagttcgtcatctccctcgacgacggctggatc
cggttcgccgcagcatcgcaccaggtggcagagctggtgaaggagctgcgctgggagctg
gaccagctccttgaagataagatcagaaaccccagcatggacctgtgtacttgtccgaga
ggctcccgtatcatccacatgatcgtcaagctcatcaccacccagtaa
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