Salvelinus sp. IW2-2015 (Arctic char): 111951857
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Entry
111951857 CDS
T05762
Name
(RefSeq) collagen alpha-1(XIII) chain isoform X1
KO
K16617
collagen type XIII alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
salp00536
]
111951857
Glycosaminoglycan binding proteins [BR:
salp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
111951857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF2637
Motif
Other DBs
NCBI-GeneID:
111951857
NCBI-ProteinID:
XP_023825884
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Position
LG25:complement(10868045..10928760)
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AA seq
746 aa
AA seq
DB search
MEEDQKWGVAGRSVGRTCSEHPCKKRFWRNWKDLSGITVGIVFSVLSLGFCILVYLRTSE
LQSRILNLEKQRDTQLSAWISLEQVEPVIFGRIDQILEEKLAARLPKTREAREAPHSCVC
PPGRPGSRGKRGRNGDPGPPGPPGRSGFPGDKGTMGIPGRLGLKGYAGEKGVPGEPGLSI
IGPRGPPGQPGTRGFPGFPGPIGLDGKPGQNGLKGDLGQRGPKGVPGESGQKGEKGVCGD
YSHRQMLPITVRNMPQINPLILKRLKQGEPGAQGPPGPPGPPGTSGTPGLNGASGPPGKP
GEPGKPGKDPRLLPGMKGEPGMPGIKGDVGTAGPEGPKGLKGDLGLKGDEGKTGGKGETG
FPGTPGRKGQAGTPGTPGIPGKRGYRGDKGEPSAAGTGIKGEPGTPGLPGLSGFKGDKGD
QGLKGEEGSDGPAGPRGPPGAAGEPGKSEIVNNENDIRNVPLMGPPGLPGPQGVPGTPGT
KGEVGLPGPSGLDGEKGPRGKPGEAGPVGPAGPEGPRGEGGLMGFSGTKGDKGDMGPSGS
HGLDGPTGEKGVSGPPGPIGLPSAMGQKGESGDKGGMSEMVYGPPGPPGPQGPVGPAGTE
GLGGPKGEPGIGIRGEKGASGLKGDKGDRGHLGLPGAHGLDGRPGPVGLIGPVGVAGPAG
LKGDRGYKGDSGVPGPIGPHGIPGLVGPQGFKGNRGERGKKGNRGTKGDKGDQGAPGLDA
PCPLGDDGLPVSGCWNKGQNPFQLAK
NT seq
2241 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagatcaaaagtggggagttgctggtagaagtgtaggcaggacctgcagtgag
cacccttgcaaaaaacgcttttggaggaattggaaagatttgtctggtataactgtcggc
atcgtattctctgtattgtctcttggattttgcattctcgtttacctgagaacctcggag
cttcagtccaggatcctaaacttggaaaaacagagagatacgcagctctccgcgtggatc
tcactcgagcaggtggaaccagttatctttggccgaatagatcagattctggaagagaaa
ttggcggctcgacttcccaaaacacgagaggccagagaagcaccccatagctgcgtttgt
ccaccagggcgtcctgggtcgaggggaaagagaggtcgcaatggggatccaggacctcct
ggtccacccggacgatcaggctttccgggtgacaaaggaacaatgggaattcctggaaga
ttggggttaaaaggatacgcaggggagaagggagtgccaggggagccaggcctgtccatc
attgggccacgaggacctcctggacagccaggaacaagaggcttcccaggcttcccgggt
ccgattgggttggacggcaagcccgggcagaatggcttgaaaggagacttgggtcaacgt
ggtcccaaaggagttccaggtgaatctggtcagaaaggggaaaagggcgtatgtggagac
tacagtcacaggcagatgttgcccatcaccgtgcgcaacatgccccaaataaaccctcta
atcctaaagcgcctcaagcagggtgagcctggagctcagggcccaccaggacctcccggc
cccccagggacctcagggacccccggactgaacggtgcaagtggaccaccgggtaaaccc
ggtgaaccaggaaaacctggaaaagatccaaggctcctaccagggatgaagggtgagcca
ggcatgccaggaataaagggtgatgttggcactgctggtcctgaaggccccaagggactg
aagggagacctcgggctgaagggagatgaagggaagacaggaggaaagggagagacaggt
tttccaggcactcctggaagaaagggtcaagctggtacccctggaacacctggtattcct
gggaagaggggctacaggggtgacaagggtgaacccagtgcagcagggactggcatcaaa
ggagaaccagggacaccaggacttccaggcctatcaggattcaagggtgacaaaggcgac
caaggtctcaagggggaagaaggatctgatggcccagctggaccaagaggtcctccaggt
gcagcaggggagccaggaaaatcagaaatcgtcaacaatgaaaatgatattcggaatgta
cctttgatgggcccacctggactacctggccctcaaggggtccccggaacaccaggaaca
aagggtgaagttggccttccaggcccttcaggtcttgacggagagaagggtcctcggggg
aagcctggagaggcaggtcctgttggcccagccggccctgaaggtcccagaggggagggg
ggcctgatgggtttctccggaaccaaaggagataagggggacatgggcccatctggatca
catggtttagatggccctactggtgaaaagggggtttctgggcctcctggtcccattgga
ttaccaagcgcaatgggtcagaagggtgagtccggagataagggaggaatgtcagagatg
gtatatgggcctccaggtcctccagggccacaaggaccagttggccctgcgggaactgaa
ggactgggagggccaaagggggagccaggcataggcatacggggagagaagggagcatcg
ggtttgaaaggcgataaaggggacaggggtcatcttgggcttcctggggctcatggttta
gacggcaggcctggtccagtgggcctgataggaccagttggtgtggcagggccagcagga
ctgaagggagatagaggttacaagggagattcaggagtcccaggaccaattgggcctcac
ggcatccctggtttagtaggaccacaaggattcaaagggaaccggggagagagaggcaag
aaaggcaacaggggaactaaaggggataagggggaccaaggagcacccggattagatgcc
ccctgtccattgggggatgatggcttaccagtatcagggtgttggaataaaggtcaaaat
cctttccaactggccaagtag
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