Salvelinus sp. IW2-2015 (Arctic char): 111951870
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Entry
111951870 CDS
T05762
Symbol
polr1b
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA2
KO
K03002
DNA-directed RNA polymerase I subunit RPA2 [EC:
2.7.7.6
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111951870 (polr1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111951870 (polr1b)
Enzymes [BR:
salp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111951870 (polr1b)
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
111951870 (polr1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpa2_4
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
DUF1186
Motif
Other DBs
NCBI-GeneID:
111951870
NCBI-ProteinID:
XP_023825932
LinkDB
All DBs
Position
LG25:5604637..5622320
Genome browser
AA seq
1134 aa
AA seq
DB search
MDFASKWSSLLTSPSLKHLTEAGYGIPKEKQHAAVQDLTKAHIESFDQAVSDGLCRAVQA
IHPLEFMFKNDRISLAFVEATIFKPVVGKGSICRDLRVFPAECRGRRCSYRGKLVADVSW
SVNGVPKGIIKQSLGQLPIMVKSRLCNLHGLPPKELIEHHEEAEEMGGYFIVNGNEKVIR
MLIMPRRNYPIAMSRPKWKNRGQGYTQYGISMHCVKEEHTAINMNLHYLDNGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREANSFYKSCVSEMLRLVMEEGCITRGKV
LNYLGERFRVKMNLPEWYTHEQCANYLLDQCICIHLKSAVEKFYLLCLMTRKLFTFAKQE
CMEENPDSLMCQEVLTPGRLYLMFLKERMAAWMVSVKLAMEKRAHRLTGGVSSDNLVKIF
NMGSDVTHPFEYLLATGNLTSKTGLGMIQKTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIIAPALPTTTLPALLCSLGVT
PVDGSPGRAYADCYPVLLDGAMVGWVETELAPFLADSLRRFKVLKEKKIPPWTEIVLVPQ
TSKASMYPGLYLFTTPCRMVRPVRNLALGQQELIGSFEQLYINVCISEDEIEPGVTTHQE
LFLHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFQDRSDNKLYRLQTPQSP
LVRPVMYDHYNMDNYPIGTNAIVAVISYTGYDMEDAMILNKSSWERGFGHGCVYKTELVD
LALKIKGEDNLVFGVKPDDPKVMDKLDTDGLPSIGAVLKHGDPFYSYINLNTGQSFVNFY
KSQESCVVDNIKVCSNDVGSGRFKRVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLCHDATPFTFSEENSALEH
FGDMLRAAGYNHYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNIQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLL
EKPPPYWSATRHRKTVCLLCGKSDSIDTVSVPYVFRYFVAELAAMNIKIKLDVK
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atggattttgcgagtaagtggagtagtttactgacaagtccaagccttaaacatttaaca
gaagcaggctacggcataccgaaggaaaaacaacatgccgctgttcaggacctaacgaag
gctcatattgagtcgtttgaccaagcagtttcagatggactgtgtcgtgctgtacaggcc
atccatcccttggagtttatgtttaaaaatgaccggatcagcctggcatttgtggaggcc
accatctttaaaccagtggttggcaaaggaagcatctgccgggacctaagggtgttccca
gcagagtgcagagggagacgctgctcctaccggggaaagcttgtggcagatgtcagctgg
tccgtgaatggggttcccaaaggcatcatcaagcagtcgctgggccagttgcccatcatg
gtgaagtctaggctgtgtaacctgcatgggctccctcccaaagagctcattgagcaccat
gaggaggctgaggaaatgggtggttattttattgtgaatgggaacgagaaggttattcgc
atgctgatcatgccaaggaggaactaccctatcgctatgtcaaggccgaagtggaagaac
agaggccagggatacactcagtatggtatctcaatgcactgtgtgaaggaggagcacacc
gctatcaatatgaacctgcattacctggacaacgggactgtgatgctcaacttcatatac
cagaaagagctcttcttcctccccctgggctttgcactaaaggctctagtggacttcaca
gacttccagatttaccaggagctgatcaaaggtcgcgaggcgaactccttctacaagagc
tgtgtgtctgagatgctgcgactcgtcatggaggagggctgcatcacccgcggcaaggtg
ctcaactacctgggcgagcgcttccgggtcaagatgaacctgccagagtggtacacccat
gaacagtgtgccaactacctgctcgaccagtgcatctgtatccacctgaagtcggctgtg
gagaagttctacctgctgtgtctgatgacgcggaagctattcacgtttgccaagcaggag
tgcatggaggagaacccagacagtctgatgtgtcaggaggtgctcacgccaggacggctc
tacctaatgtttctcaaggagaggatggctgcctggatggtgtctgtgaaactcgctatg
gaaaagagggcccataggctgactggtggggtgagctctgataatctggtgaagatcttc
aacatgggctctgatgttacccatccctttgagtatctgctagccactgggaatctcact
tcaaagacgggtctgggcatgatccagaagacgggactgtgtgtggtggccgacaagctc
aacttcatccgctacctgtcccacttccgctgcgtgcacagaggtgcagcctttgccaag
atgaggaccacctccgtacgtcgtctgctgcccgagtcctggggcttcctgtgccccgtg
cacacccccgacggagagccctgcggcctcatgaaccacatgacggcccactgtgaaatc
atagccccggccctgcccaccaccaccctccctgccctgctctgctccctcggtgtgact
cctgtggatggttctcctggcagggcctacgctgactgctatcctgtgctcctggatggt
gccatggtgggttgggtagagactgagctggcccccttcctcgcagactccctccgcagg
ttcaaggtgttgaaggagaagaagatccctccctggactgagatagttctggttccccag
accagcaaggccagcatgtacccaggcctgtacctcttcactaccccctgccgcatggtg
cggcctgtccgcaacctggccctgggccagcaggaactgatcggctcctttgaacagctc
tacatcaacgtgtgcatcagtgaggatgagatcgagccgggtgtgaccacccaccaggag
ctcttcctccacagcatgctgagcgtggtggctaacttcatcccttactcggaccacaac
cagagtcccaggaacatgtaccagtgccagatgggtaaacagaccatgggcttcccccta
cactcgttccaggaccgctcggacaacaagctgtaccgccttcagaccccccagagccct
ctggtcaggcctgtcatgtacgaccactacaacatggacaactaccccatcggcaccaac
gccattgtcgctgtgatctcctacactggctacgacatggaggacgccatgatcctgaac
aagtcgtcatgggagaggggctttggtcatggctgtgtttacaagactgagctggtggac
ctggcactgaagataaagggcgaggacaacctggtgtttggggtcaaacccgatgacccc
aaggtaatggacaaactggacactgatggtctgccctccatcggcgcagtgctaaaacat
ggagaccccttctacagctacatcaacctcaacaccgggcagagctttgtcaacttttac
aagagtcaagaaagctgtgtagtagacaacatcaaggtgtgcagcaacgacgttggctcg
ggccgcttcaagcgcgtctgcatcaccatgcgagtgccccgtaaccccaccatcggggat
aagttcgccagccgccacgggcagaagggcatcctgagccgcttgtggcctgccgaggac
atgcccttcacagagagcggcatgacccccgacattctgtttaaccctcacggcttcccc
tcccgcatgaccatcggcatgctcatcgagagcatggccggcaagtcgggcgccctccac
ggcctgtgccacgacgccactcccttcactttctccgaggagaactcggcactggagcat
tttggggacatgttgcgcgctgccggctacaaccactacggcaccgagcgcctctacagc
ggcctcagcggcctggagctagaggcggacatcttcatcggcgtggtctactaccagagg
ctgcgtcacatggtctccgacaagttccaggtgaggaccaccggcgcgcgggacaaggtg
accaaccagccggtgggcggaaggaacatccaggggggcatccgcttcggggagatggag
cgcgacgccctgctggcccacgggacctccttcctgctccacgaccgcctcttcaactgc
tctgaccgctctgtggcacaggtgtgtgtggactgtggtagcctactgtcccctctactg
gagaaaccaccaccctactggtcggccacacgccaccgcaagactgtctgcctcctctgc
ggcaagagtgactccatcgatacggtgtctgtgccatacgtcttccgctactttgttgcc
gagctggcggcgatgaacatcaaaatcaaattggacgtgaagtga
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