Salvelinus sp. IW2-2015 (Arctic char): 111951983
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Entry
111951983 CDS
T05762
Symbol
prkn
Name
(RefSeq) E3 ubiquitin-protein ligase parkin
KO
K04556
parkin [EC:
2.3.2.31
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04120
Ubiquitin mediated proteolysis
salp04137
Mitophagy - animal
salp04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
111951983 (prkn)
04120 Ubiquitin mediated proteolysis
111951983 (prkn)
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
111951983 (prkn)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
salp04131
]
111951983 (prkn)
04121 Ubiquitin system [BR:
salp04121
]
111951983 (prkn)
03029 Mitochondrial biogenesis [BR:
salp03029
]
111951983 (prkn)
Enzymes [BR:
salp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
111951983 (prkn)
Membrane trafficking [BR:
salp04131
]
Autophagy
Mitophagy
PINK1-Parkin associated proteins
111951983 (prkn)
Aggrephagy
Other aggrephagy associated proteins
111951983 (prkn)
Xenophagy
Other xenophagy associated proteins
111951983 (prkn)
Ubiquitin system [BR:
salp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
111951983 (prkn)
Mitochondrial biogenesis [BR:
salp03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-dependent mechanism factors
111951983 (prkn)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_14
zf-RING_12
IBR_2
ubiquitin
IBR
IBR_1
ADAMTS_CR_3
Rad60-SLD
Dsc3_N
Motif
Other DBs
NCBI-GeneID:
111951983
NCBI-ProteinID:
XP_023826141
LinkDB
All DBs
Position
LG25:complement(8974913..9063610)
Genome browser
AA seq
458 aa
AA seq
DB search
MIVYVRFNSSHGFPVELEEGASIAVLKEKVGRLQGVQPEQLRVIFAGRELLSDCTLQGCD
LPEQSTVHVVLPPPGSGRCSDLALQHRLGRGVDSLTRLDLTASRLPSTSTGLAVILETDD
EQRAREEPEHTEPRPHSSFYVYCKSVCRAIQPGKLRVRCRACKQGTLTLSRGPSCWDDVL
LPERIHGVCQSEGCLGRVAEFYLKCAAHPTSDDDTSVALDLVMPNVRDVPCIACTDIMSP
VLVSQCPDRHVICLDCFHMYCVTRLNERQFIHHPDVGYSLPCAAGCPDSLITELHHFRAL
GDEQYERYQQYAAEECLLQMGGVLCPAPGCGAGLLPEEDKRMIQCLLSNGLGCGFVFCRD
CKEGFHEGECRVRSSPVSGGALQGYVVDEEAALQARWEQASQETIDETTRPCPHCKVPVE
KSGGCMHMVCPRAQCKFEWCWVCRVEWNRECMGNHWFG
NT seq
1377 nt
NT seq
+upstream
nt +downstream
nt
atgattgtgtatgtgaggtttaactccagccatggcttcccagtggagctggaggagggg
gccagcatcgcagtgctgaaggagaaggtggggaggctgcagggggtacagccggagcag
ctgagagtcatctttgctggcagagagctgctcagcgactgcaccctccagggctgtgac
ctcccagagcagagtaccgtgcacgtggtgctgcctcccccagggtcgggccggtgctct
gacctggccctgcagcaccgtctgggtcgaggggtggacagcctcacccgcctggacctc
accgcctcccgcctgccctctacctccactggcctggccgtcatactggaaactgatgac
gagcagagagccagggaagagcctgagcacacagagcccagacctcacagcagcttctat
gtgtactgcaagagtgtgtgccgggccatccagccggggaagctacgcgtgcgctgccgg
gcctgcaagcagggaaccctcaccttgagccggggcccgtcatgttgggacgatgtcctc
ctcccagagcgtatccatggcgtctgtcaatcagagggttgccttggcagagtagcggag
ttttacctgaagtgtgctgcccaccccacctctgatgatgacacgtctgtggccctggac
ctcgtcatgcccaatgtgcgggatgtcccatgcattgcctgcacagatatcatgagtcca
gtgttggtgtcccaatgtccagaccgccatgtcatttgtctagactgcttccacatgtac
tgtgtgacccgcctcaacgagcgacaattcatccaccacccagatgtcggctactcactt
ccatgtgcagctggctgcccagactctctcataacggagttgcatcacttccgggcccta
ggtgatgagcagtatgagcggtaccagcagtatgcagccgaggagtgtctcctccagatg
gggggagtgttgtgtccagcccctggatgtggagcagggctgctgccggaggaggacaag
aggatgatccagtgtctgctcagcaacggtttgggatgcgggtttgtgttctgccgtgac
tgtaaggaaggattccatgagggggaatgtcgtgtgaggtcatcacctgtctcaggagga
gccctgcagggttatgtagtggacgaggaggcagctcttcaggctcggtgggagcaggcc
tcgcaggagactatagacgagaccacccgtccatgtccacattgcaaggtcccagtggag
aagagtggtggctgtatgcacatggtgtgtccccgtgcccagtgtaagtttgagtggtgc
tgggtctgtcgtgtggagtggaacagggagtgtatgggcaaccactggttcggctga
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