Salvelinus sp. IW2-2015 (Arctic char): 111952308
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Entry
111952308 CDS
T05762
Name
(RefSeq) transcription factor Sox-19b-like
KO
K16796
transcription factor SOX2 (SOX group B)
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111952308
Transcription factors [BR:
salp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
111952308
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_2
HMG_WDHD1
SOXp
Motif
Other DBs
NCBI-GeneID:
111952308
NCBI-ProteinID:
XP_023826648
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Position
LG3:complement(21242400..21248316)
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AA seq
289 aa
AA seq
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MYNMMEHELKPSGQQQSHQTAMSPVTGNSHPGSKSLCPPGGDPMDKVKRPMNAFMVWSRG
QRRKMAQENPKMHNSEISKRLGAEWKLLTDAEKRPFIDEAKRLRAVHMKDYPDYKYKPRR
KSKPLLKKDNQMGKYPLSAGNLLAAAQGQGGSPRMESYGWGPAGGYAGMQSEALGYTQQL
HRYDLSALQYPQAMTAAQTYMNGANTYSPMSYSSSHQQPNPVMSMVKPEPVSHSPTGGPN
HHRGPLQGDLRDMISMYIPGGDTNDPVSQRGGYSVQQHYLSGTVPLTHI
NT seq
870 nt
NT seq
+upstream
nt +downstream
nt
atgtataacatgatggaacacgagttgaagccctctgggcaacagcagtcgcaccaaacc
gccatgtctccggtcaccggtaactctcacccggggtccaaatccctgtgtcctccgggc
ggggaccccatggacaaggtcaaaagacccatgaacgccttcatggtctggtctaggggc
cagcgccgcaagatggcccaggagaaccccaagatgcacaactctgagatcagcaagcgg
ctgggcgccgagtggaagctactgactgatgctgagaagcggccattcattgacgaagca
aagcgcctcagggcggtgcacatgaaggattaccccgattacaagtacaaaccacgccgt
aaatccaagcccctgctcaagaaggacaaccagatgggaaagtaccctctctctgccggg
aacctgctggccgccgcgcagggccaaggtgggagccccaggatggagagttacgggtgg
ggcccggcgggaggttacgccgggatgcagagcgaggccctgggctacactcagcagctg
caccgctacgacctgtccgcgctccagtacccccaggccatgaccgcagcacagacgtat
atgaacggtgccaacacttacagccctatgtcttacagcagcagccaccagcagcccaac
ccagtcatgtccatggtgaagccagagccagtgtcgcactccccgactggtggacctaac
caccaccgtgggcctctccagggggacctgagggatatgattagtatgtacatccctggg
ggggacaccaatgaccctgtctcccagagaggaggctacagcgtccagcaacactatctc
agtgggactgtgcctctcactcatatctaa
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