Salvelinus sp. IW2-2015 (Arctic char): 111952394
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Entry
111952394 CDS
T05762
Name
(RefSeq) ubiquitin-60S ribosomal protein L40
KO
K02927
ubiquitin-large subunit ribosomal protein L40e
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03010
Ribosome
salp04120
Ubiquitin mediated proteolysis
salp04137
Mitophagy - animal
salp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03010 Ribosome
111952394
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
111952394
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
111952394
04137 Mitophagy - animal
111952394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03011 Ribosome [BR:
salp03011
]
111952394
04121 Ubiquitin system [BR:
salp04121
]
111952394
Ribosome [BR:
salp03011
]
Ribosomal proteins
Eukaryotes
Large subunit
111952394
Archaea
111952394
Ubiquitin system [BR:
salp04121
]
Ubiquitins and ubiquitin-like proteins
Ubiquitins
111952394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ubiquitin
Ribosomal_L40e
Rad60-SLD
Ubiquitin_2
Rad60-SLD_2
DUF2604
TBK1_ULD
Ubiquitin_5
zf-C4pol
OTU1_UBXL
Dsc3_N
UBL_UBAC1
Motif
Other DBs
NCBI-GeneID:
111952394
NCBI-ProteinID:
XP_023826783
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All DBs
Position
LG26:9248607..9250182
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AA seq
128 aa
AA seq
DB search
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN
IQKESTLHLVLRLRGGIIEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNN
LRPKKKLK
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgcagatcttcgtgaagacgttgacggggaaaacaatcacccttgaggttgagcccagc
gatactattgaaaatgtcaaggctaagatccaggataaggaaggcattcctcctgatcag
cagcgtctgatcttcgctggcaaacaacttgaggatggtcgcaccttgtcagactacaac
atccagaaagagtccacccttcatcttgtgctgcgtcttcgtggaggcattatcgagcca
tctttgagacagctggcccagaagtacaactgtgacaaaatgatctgccgcaagtgctac
gctcgcctccatcctcgtgctgtcaactgccgcaagaagaagtgtggacacaccaacaac
ctgcgccccaagaagaagctgaagtaa
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