Salvelinus sp. IW2-2015 (Arctic char): 111952430
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Entry
111952430 CDS
T05762
Symbol
edc4
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111952430 (edc4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111952430 (edc4)
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111952430 (edc4)
mRNA degradation factors
5'-3' decay
Decapping complex
111952430 (edc4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_EDC4L
Beta-prop_TEP1_2nd
WD40_Prp19
WDR55
Pdc1_Ge1
NBCH_WD40
Motif
Other DBs
NCBI-GeneID:
111952430
NCBI-ProteinID:
XP_023826853
LinkDB
All DBs
Position
LG26:21409049..21452591
Genome browser
AA seq
1410 aa
AA seq
DB search
MASNSNIDIEGATQHLRDILKLDRPGNNVDASPCENQRKTSFNGELNGLLPGAGNRSTMD
ESTGRNSENMNAQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKVKIQP
VAKYDWEHKHYYGNLIAVSNSYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAVTDLA
FAHLDSTLLGCVDEAGNLVIWQLTCHSSKIQDQVVVHIRRPEDTPLNSNRRLIWCPFILE
DNEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTERISEG
ALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCLLFCD
NHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDL
SAECLILSDVQRKVLYVMELLQDQEKGHASFTAVSEFLLTHPVLSFGVQDVSRSRLRHTE
VLPPDEESESMTAEGNQGPMESRAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLFLPHS
DSNDGFGFSDHLTDMSMEGLSSDKESGCGSQNDLRKIPALPAPADFMSPTGAAAMPKLMT
PDAFMTPSASVPASPGSSASSLKMVTAMTSNSDSGARGGEELTQNPKMSMESSSSSSLTL
SASTSSPRASSLLISGLGDNMPVLPSPNPPLSMDPQVIEPMLIQHASPTLARSPDVISSA
STAMSQDIPEIASETLQRSLGGVSGAESRDSLPALHTDSMASAASALHHLSPRNRNNSDH
GHLTLELGAGAVEAEQRLSNTPSLLENALSQENATAAAAASCSDNNTSHPWPAAPDITRE
TRNSLRDNGLGDCSREEMKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSS
GNCGARSSQRLPGKEWKSSPRGSPKLKRKSKKDDGDASHATQSRQPEHHNHHQINPEVQE
ELLMLLRNQQRELADLRQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEHEQRRMERI
LAEGQNRNQQLQEHLSQQLAQTLNNTLCNRLDKTLREEMKKTVPPTIIKSLEPVTAQMNN
TIAAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFER
GCQSMFQQINDSFKQGTHEYIQQLETHVKSRKQREQEGQDPMIGQLQQMIDTFQNSTDQL
ATTVTASVRSEVQHQLNMTVGNLQESILTQVQRIVKGEVSMAMKEQQAAVTSSIMQAMRS
AAGTPVPTPHLDYQAQQANILQLLQQGQLNQAFQQALSASDLNLVLYVCETIDSQQVFGQ
HPCPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMSTVLSQVRQK
LFQFLQQDPHSPLSKRARRLVMMLQGLVNH
NT seq
4233 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgacatatta
aagttggatagacccgggaacaacgtagacgcatctccatgtgagaaccaaagaaaaaca
tctttcaatggcgaattgaatggacttctaccgggagctggcaacaggtcaaccatggat
gaatccacaggccgtaattcggagaacatgaacgcccaagagtgccagataatctgcctc
tctggggatgatggctccacttgcattcccatcacatcaaacaatgttgaaattgtggcc
agtcgagactcaagcattgacagcaaggcccgtggcagcaacaaggtaaaaatccagcct
gtcgccaaatacgactgggagcacaagcattactacggcaacctgattgcagtttctaac
tcatacctggcgtatgcaatccgaggagcaaacaaccaggccatgatccgtgtgttgagc
ctgggctccgcggagcgcaccctgctgaagggcttcactggtgcagtcacagacctggcc
ttcgcccatctggactccaccctgctgggatgtgttgacgaagctggcaacctggtcatc
tggcagctcacctgccacagcagcaagatccaggatcaagtggttgtccacatccggagg
cctgaagacacacctctaaactccaataggaggttgatctggtgtcccttcatcctcgag
gacaatgaagagaaccctgaggatgctagccagaccttggccctgctgcatgaagacagg
gctgaggtgtgggatctggagatcctccgcagcaacaatagcacctggccagtagatgcc
actgacctgaaggacggcgttataaccataaaaggacatacagagcgtataagtgaaggt
gccctgtctccggatggcacagtcttggccacagccagtcatgatggttatgtaaagttc
tggcaaatctacattgaaggacaggaccagccaagtcctctccccggcttctttcacaga
tgtctgcatgagtggcagccccacaatgggaaccccctctcctgcctgctgttctgtgac
aaccacaagaaacaggacccagatgttccattctggcgctttctgattactggagctgat
cagaaccaggagctgaagatgtggtgcacagtgtcatggacctgcctgcagaccatcagg
ttctctccagacccgttcaactcctcagtccttcccagtctaaaggccagcctggacctc
tctgcagaatgcctcatcctcagcgacgtacagagaaaggtgttgtatgtgatggagttg
ttgcaggaccaggagaagggccatgccagcttcacagccgtgtccgagttcctgcttaca
caccctgtactcagctttggtgttcaggatgtcagccgcagccgcctgcgccacacagag
gtcctccccccagatgaggagagcgagagtatgactgcagagggcaaccagggcccaatg
gaatccagagctgggatacaaataaagctatactgtgtccacacaaagtcccttcaagat
gtgcagatctggttccagccaaaccttgggtctggctcgtccttatttctgcctcactca
gactcaaatgacggctttggtttttcggatcacttgacagacatgagcatggaaggtttg
agctctgacaaggagtccggatgtggctcccaaaatgatctccgtaagattcccgccctt
cctgctcctgctgacttcatgtcccccactggcgccgccgctatgcccaagctcatgacc
cctgacgccttcatgacccccagtgcttcagtcccagcctccccaggcagcagtgccagc
agcctgaaaatggtgacagccatgaccagcaactctgacagtggcgccaggggaggagag
gagctgacccagaaccccaagatgtctatggagagcagcagcagtagcagtctgactctc
agtgcgagcaccagcagccccagagccagctcccttctcatctcaggcctaggggataac
atgccggtgcttccctctccaaacccgcccctctcgatggacccacaggtcattgagcct
atgctgattcagcatgcctctcccaccctggcccgctctccagacgtcatctcatctgcc
tccacggccatgtcacaggacatccctgagatcgcctctgagacgctgcagcgaagcctg
gggggtgtgtctggagctgaatcccgagactctctcccagccctccacacagacagcatg
gcttctgcagcctcagcccttcaccacctctctccacggaaccggaacaactctgaccac
ggccacctgaccctagagctgggtgctggagcagtggaggcggagcagaggctcagtaac
actccttcactactggagaatgccctgtcacaggagaatgctactgcagccgccgctgcc
tcctgctccgacaacaacacaagccacccctggcctgcagctcccgacatcacacgggaa
acgcgcaacagcctgcgggacaacggcctaggagactgctcaagggaggaaatgaaggac
agacacatgtcctctccataccacagacgcacctaccacttaacccagaatgacagtcag
gacgccagtgcagaacagagtgaccatgatgacgaggtggccagtctagcgtcgtcctcc
gggaactgtggagccaggtcgtctcaaagactgccagggaaggagtggaagagctctccc
agaggctcccctaaactcaagaggaagagtaaaaaagatgatggggatgcatctcatgcc
actcagtccaggcagcctgagcatcataatcatcatcagatmaaccctgaggtgcaggaa
gagctgctgatgctgctgcgtaaccagcagagggagctagcggatctccgtcagagtcag
ctagagctgctgcagagagtgacgggccacatggacgcagtgcagagctctgtcatagcc
catgtggagcacgtcatggtcagccagcaggagcacgaacagaggagaatggagagaatc
ctagcagagggacagaaccgtaaccagcaactccaggagcatctctcccagcagctggct
caaactctcaacaacaccctgtgtaaccgtctggacaagactctccgagaggagatgaag
aaaaccgttcctcccactattatcaagagtctcgagcctgttactgcccagatgaataac
accatcgctgctaagctgacggctgtggaggcagcactgaaggagaacgtcagcaaagtc
gtcaagtcaaagaacaccacagatgcaatcggccgggcagctgctgaggcaatgcagggg
cctatccaggctgcctacaaggatgcgttccagagcattgtgctgcctgtgtttgagagg
ggctgccagtctatgttccagcagatcaatgacagcttcaagcagggaacacatgagtat
atccagcaactggagacccatgtgaagagcaggaagcagcgtgagcaggagggccaggac
cctatgattggccagctgcagcagatgattgacacgttccagaattctacagatcagctg
gccaccactgtcacagcaagtgtccgctcggaggtccagcaccagctcaacatgacggtg
ggaaacctgcaggaatcaatcctgacccaggtgcagcgcatagtgaagggtgaggtgagc
atggccatgaaggagcagcaggcagctgtgacctccagcatcatgcaggccatgcgctct
gctgcaggcacgcccgtccctaccccacacctagactaccaggcccagcaggccaacata
ctgcagctgctgcagcagggacagctcaaccaggccttccaacaggccctgtcagcctct
gacctgaacctggttctgtatgtgtgcgagaccatcgactcccagcaggtgtttggccag
catccctgccccctgatccagccagtgctgctgtccctcatacagcagctatccactaac
ctggccacacgctctgagctcaagatcagttacttggaggatgctgtgatgaacctggac
catggtgatccggtgacgagagaccacatgagtactgtgctgtcccaggtccgacagaaa
ctgttccagttcctgcaacaggacccacacagtcctcttagcaagagagcccggcgcctg
gtgatgatgcttcagggcctggtcaatcactag
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