Salvelinus sp. IW2-2015 (Arctic char): 111952442
Help
Entry
111952442 CDS
T05762
Name
(RefSeq) laminin subunit beta-1-like
KO
K05636
laminin, beta 1
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510
Focal adhesion
salp04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
111952442
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
111952442
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_EGF
LAMININ_IV_B
Laminin_N
F5_F8_type_C
Motif
Other DBs
NCBI-GeneID:
111952442
NCBI-ProteinID:
XP_023826876
LinkDB
All DBs
Position
LG26:40920781..40957884
Genome browser
AA seq
1789 aa
AA seq
DB search
MFIFQIATMLSAGACVLAQVGIPEFSDVCTEGSCYPATGDLLIGRAHQLSTNSTCGLHRP
ETFCIVSHLQDEKKCFSCDSTDVYVKSVVNTTTGHRVENVVTTFAPNRLKTWWQSENGLE
KVTIQLNLEAEFHFTHLIMTFKTFRPAAMVIERSADFGKKWQVYRYFAYDCAAAYPAISP
GPMQKVDDIICDSHYSDIEPSTEGEVIFRVLDPAFRIEDPYSPRIQNMLKITNLRVKFTK
LHTLGDNLLDSRMEIKEKYYYAVYDMVVRGNCFCYGQASECAPVDGAGAGDGVEGMVHGH
CMCNHNTMGLNCEKCQDFYHELPWRPAKGRNTNACKKCNCNQHSGSCHFDMAVYVSTGNV
SGGVCDECQHNTMGHNCEQCKPFYYQHPERDIRDPSICEPCNCDPVGSLNGGICDRMTDV
SSGLITGQCRCKPNVEGERCDQCQQAHYGLGDHPLGCLACTCNTLGTVPGGSPCHTDSGD
CFCKSLVTGRDCDQCMPQHWGLSNDMDGCRPCDCDLGGALNNDCSQETGQCACREHMFGR
RCDQVESGFYFIALDHYTYEAEDAKFGPGLTVVQRPRPQDRSPTWTGIGFVNVPEGAYLE
FSIDNIPHSMEYDVLIRYEPQLPDQWEEVLMTVMRPSLISADSRCANNMPDDDNQMISLH
PGSRYVVLPRPVCFEAGMNYTVRLSLPLYSALSDVQSPYTLIDSIVLMPHCKNLEMFTGS
VGGDVATNSAWDTFQRYRCLENSQSVVKTPSTDICRNFIFSVSALLHQGAKACQCDPQGA
LSTVCAASGGQCQCRPNVVGRNCDKCAPATYLFGPSGCRPCDXNPQGSEDAFCHEATGQC
VCIXGAYSRQCDRCLPGHWGFPNCRLCTCNGHTEQCDPYSGKCLGCREQTTGHNCERCLD
GYYGDPVLGSGDHCRLCMCPDGPGRGRQFAGGCYRGLDSPYQVFCICSPGYRGARCEECA
PGYYGNPHENGGQCQPCQCNNNIDMLDQESCDARTGECLKCLYHTEGQGCHSCKLGYYGD
ALTQNCRKCVCNHLGTNPATCPVVGDCHCNLGSGQCQCLPNVVGQHCDQCAPDTWNMASK
TGCDACDCDPNHSFGTSCNELSGQCSCKPGFGGKTCRECRELFWGEPEVKCNACDCDPRG
IAEQQCHKANGHCVCVEGVSGPRCDVCTRGYSGTFPYCERCHQCLADWDLVVGQLTNQTH
RLVNKVNTIKASGITGPYKHTIDNMEQSAGAIRTILAQNPATQPLSEIQQLLEQATDLME
KMSNKLNLTEEALAQVSSDDNSTNTKLDSLKEDTQKLDRTVKDLLDQVEFIKNTDIRGAT
DSVTKYYQQSLAADARANASTSGPGNPVESSAILRLATEDKMNDTREEFHRRQEEHAKRL
DDLAGQLETLDLSELSVKTCGSPADGACGDSPCGGLSCVDSEGNRRCGGEGXDGLVTLAN
NAWQKAKDFDQEILTAMEEVDKLAKMVSEAKVKADEAKLSAQNVLLKTNGTKQRVDQSNE
ELRSLIRQIRDFLTQDAADLESIEAVANEVLAMQMPTTPAQLQTLTDEIKKRVGDLAHVE
TILNQSSDDIQRAESLLEQARRVSKEATNVRDTAEMVKQVLEEAERAQSAAAKAIKQATT
DIKGTNDLLTSVESETADSEYKLNNATQRLLRLERDVTLLREKTLNTSLSSEQTEKDTES
INKVAEQVKKDLXXELKDKYSTVEDLITQKAGGVANAKKRAELLQQEAKDLLLQASDKLQ
LLKDLEKSYEDNQKTLEHKANQLVDLEKSIKELLQEISHKVTVYSTCLF
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atgtttatatttcagattgcgaccatgctatccgcaggggcgtgcgtccttgcccaggta
ggcatacccgagttcagcgatgtatgcacggaggggagctgctacccggcaaccggagac
cttctcattggcagagcacaccaactctccaccaactccacatgtggccttcaccggccc
gagacgttctgtatcgtcagtcatttacaggatgagaagaaatgcttttcgtgtgactcc
accgacgtctacgtcaaaagcgtggtgaacaccaccaccgggcaccgggtggagaacgtc
gtgaccacattcgcccccaaccgcttgaaaacctggtggcagtcagagaatggtcttgag
aaagtgaccatccagctgaacttggaggcggagtttcatttcacccacctcatcatgacc
ttcaagaccttccggcctgctgctatggtgatcgagcgctcggctgactttgggaagaaa
tggcaggtttaccgctactttgcatacgactgtgcggcggcataccctgccatatccccg
gggcccatgcagaaagtggatgacatcatctgcgattcgcattactccgacatagagccg
tcaacagagggagaggtcattttccgggttttggatccagctttccgtattgaagatccc
tacagccccagaatccaaaacatgttgaagatcaccaacctgagggtgaagttcaccaag
ctgcacaccctgggagacaacctgctggactcccgcatggagatcaaggagaagtactac
tacgctgtctacgacatggtggtccggggtaactgcttctgctacgggcargcctccgag
tgcgcccccgtcgacggggctggggctggggatggagtggagggcatggtccatggccac
tgtatgtgcaaccacaacaccatggggctaaactgtgagaagtgtcaggacttctaccac
gagctgccctggagaccagccaagggacgcaacaccaacgcctgtaaaaagtgtaactgt
aaccagcactcaggctcgtgtcacttcgacatggcagtttacgtctctacgggtaatgtg
agcggcggcgtgtgtgacgagtgccagcacaacaccatgggtcacaactgtgaacagtgc
aagcctttctactaccagcacccagagagggacatccgcgaccccagcatctgtgaacca
tgtaactgtgatccggtgggctccctgaacggcgggatctgtgacaggatgactgatgtg
tcgtctggactgatcactggccagtgtcgctgcaaacccaatgtggagggagagcgctgt
gaccagtgccagcaggcccactatggcctgggtgaccaccctctgggctgcctggcctgc
acctgtaataccctggggacagttcctggagggagtccgtgtcatacagactcaggagat
tgtttctgcaaaagcctggtcacagggagagactgtgaccagtgtatgcctcagcactgg
gggctcagcaatgatatggatggctgcagaccatgtgactgtgacctgggtggagccctc
aataacgactgttctcaggagactggccagtgtgcgtgtagagaacacatgtttggccgg
cgctgtgaccaggtggagtcaggcttctacttcatcgccctggaccactacacctacgag
gccgaggacgccaagtttggacctggtttgacagtagtgcagagacctcgcccgcaggac
cgtagccccacctggacagggataggttttgtcaacgttcccgagggggcctacctggag
ttctctattgacaacatccctcactccatggagtacgacgtcctcatccgctacgagcct
cagttaccggaccagtgggaggaggtgttgatgacggtgatgcggcccagtttgatttca
gcagacagtcgctgtgccaacaacatgcctgatgacgacaaccagatgatatcccttcac
cccggatcacgatacgtggtgctccccagaccagtgtgtttcgaggcagggatgaactac
actgttcgtctgagcctgcccctctactctgcactcagtgacgtccagtccccatataca
cttatcgactcgattgtgctaatgccccactgtaagaacctggagatgttcactggttct
gtgggaggtgacgtggccaccaacagtgcctgggacacgttccagcgttaccgctgtcty
gagaacagccagagcgtagtgaagaccccgtccacagacatctgccgtaacttcatcttc
agcgtatctgctctgctgcaccagggagctaaagcatgccagtgtgacccgcagggcgcc
ctcagcacggtgtgtgctgccagcggcgggcagtgccagtgtcgccccaacgtggtaggc
aggaactgtgacaagtgtgcccctgccacctacctgtttggacccagcggctgcagaccc
tgtgattgraatccccagggatcggaggatgcgttctgccacgaggccacaggccagtgt
gtgtgtatcrccggggcatacagccgtcagtgtgaccgctgtctgccgggtcactggggc
ttccccaactgtcgcctctgcacctgcaacggccacacagagcagtgcgacccctactcc
ggaaaatgcctgggctgccgagaacagaccaccggacacaactgcgagaggtgtctggat
ggttactatggcgaccccgtcctgggttcaggggaccattgtcggctctgtatgtgtccg
gatgggcccggaagrgggcgacagtttgccggtggatgttaccgcggtctggactcccct
taccaggtgttctgtatctgcagccccgggtacagaggtgccagatgtgaggagtgtgcc
ccaggttactatggaaacccccatgagaacggcgggcagtgccaaccctgccagtgcaac
aacaacattgacatgctggaccaggagtcctgtgatgccaggacgggtgaatgtctcaaa
tgtctctatcacaccgagggtcagggctgccacagctgcaagctgggttactatggagat
gccctcacacaaaactgcagaaagtgtgtttgtaaccacctgggcaccaatccagccacg
tgcccagtggtgggtgactgccactgtaatctgggcagcgggcagtgccagtgtctaccg
aatgtggtgggtcagcactgtgaccagtgtgcccctgacacctggaacatggccagcaag
acgggctgcgacgcctgcgactgtgaccccaaccactcatttgggacttcctgcaatgag
ctgagtggccaatgctcctgtaagcctggctttgggggtaaaacgtgtcgggagtgcaga
gagctgttctggggagaacctgaagtgaaatgcaacgcatgtgactgtgacccgcgaggc
attgccgagcagcagtgccacaaggccaacggtcactgcgtgtgcgtggagggcgtgtct
ggtccccgctgtgacgtctgcacccgtggctactctggcaccttcccctactgcgaacgc
tgccaccagtgcttrgccgactgggacctggtcgtgggtcagctgaccaatcagacccac
aggctggtcaacaaggtgaacaccatcaaggccagcggcatcaccggaccctataaacac
accatagataacatggagcagagcgccggggccataagaactatcctggcccagaacccg
gctacccagccactgtcagagatacagcagctactggagcaggccacagatctaatggaa
aagatgagcaacaagctgaacctcactgaggaggcgctggcccaggtatcatctgatgac
aacagcaccaacaccaaactggactcactcaaagaggacacccagaagctggatcgcact
gtcaaggatctgctggaccaagtggagttcatcaagaacactgacattcggggagcgaca
gacagtgtcaccaagtactaccagcagtctctggctgcagatgctcgcgccaacgcctcc
actagtggcccaggcaaccctgtggagagctctgccattttacggctagccacagaggac
aagatgaacgacaccagggaggagttccacaggaggcaggaagaacacgccaagagactg
gacgacctggcaggacaactggagacactggacttatcagaactcagcgtgaagacgtgt
ggcagcccagctgatggggcgtgtggggactctccgtgcggggggctgagctgtgtggac
tccgaggggaacaggaggtgcggtggcgaggggtgrgacggtctggtcaccctggccaat
aacgcctggcagaaggccaaggactttgaccaggagatcctcacggccatggaggaagtg
gacaagctcgccaaaatggtgtcggaggccaaggtgaaggcggatgaggctaagctgagt
gcccagaacgtgctgctgaagaccaacggtaccaagcagcgtgtggaccagagcaacgag
gagctgcgcagcctcatccgacagatcagagacttcctcacacaggatgcagcggacctg
gagagcattgaggcagtggccaacgaggtgctggccatgcagatgcccaccacaccagcc
cagctccaaaccctgacagacgagatcaagaagagagtaggagacctagcccacgtggag
accatccttaaccagagctccgacgacatccagagagccgagagcctactggagcaggca
cgcagagtcagtaaagaggcgacaaacgtgagagacacagcagagatggtgaagcaggtt
ctggaggaggctgagcgtgcacagagcgcagcggccaaggccatcaaacaggccaccacc
gacatcaaaggcaccaatgacctcctgacctcagtggagtcggagacagcggactcggag
tacaagctgaacaatgccacccagaggctgctgcggttagagcgagacgtcacgctgctc
agagagaagacactgaacacctcactcagctctgaacaaactgaaaaagacacagagagc
atcaacaaagtggctgagcaggtcaaaaaggacctggkctrggagctgaaggataagtac
agcaccgtggaggacctgatcacacagaaggccgggggcgtggccaacgccaagaagagg
gcggagcttctacagcaggaagccaaagacctgctgctacaggccagcgacaagctgcag
ctactgaaagatttagagaagtcgtatgaggacaaccagaagactttggaacacaaggcc
aatcagttggtggatctggagaagtccatcaaagagcttctgcaggagatcagtcacaaa
gtcactgtctacagtacctgtctgttttaa
DBGET
integrated database retrieval system