Salvelinus sp. IW2-2015 (Arctic char): 111952692
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Entry
111952692 CDS
T05762
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
111952692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111952692
03036 Chromosome and associated proteins [BR:
salp03036
]
111952692
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
111952692
Coactivators
SAGA/TFTC/STAGA complex
111952692
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
111952692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
TAFH
Motif
Other DBs
NCBI-GeneID:
111952692
NCBI-ProteinID:
XP_023827357
LinkDB
All DBs
Position
LG26:41867968..41902424
Genome browser
AA seq
1002 aa
AA seq
DB search
MAGASDPLEDMLFNEVDEKAVSDLVGSLESQLVSQKTSPATYSDIKREGSTGTVSQFSGK
VRDQVGSLEPPQQGHPKAVLNAEPCANQAISNTSITASTSSITTGGIINAGTNLQTHGAA
SRIISPAPPGSVTLPAQTTSFNRGTVLGPAEISVVTAPNSNPTTTTAIRTPSPGLQSFNG
SPGAVKLVNSPAAAPQIGSGGNTVISTASAGNSNIIVSMASQPPSLPNYPVSQSAVAFVT
PTVTLQRHPSPMASASQNGVIDPKVSAVVTQGAGSPGATTSQVMNRNNTLINTTMVAPNQ
PVSAGQSIILGGSPSPVVVNSPISQAQSVASPTLAAGVKPTVNGVGQPTVTIVRPPGAAV
MTTSVQQQRPGLVASPTRTVAPQMVVRPPQQTTIQLPPGFTIPPGMVLVRTDTGQLVMVP
QQVLAQAQAKTQQGQAAVSNISPRPATATAGATIRVGTPSQAPCTTQAVRLASPVQARML
QSPSPTSSAIQKAITVAPAGASVSVKMTTPQKAQTVITGGQALTKPGAVRPSITFNTAAS
ASTTPTMVTAPVSQEMQENVKKCKNFLSTLIKLASHNSPSPDTSKNVKALVQDLLDAKIE
PEEFTTRLQAELKSSPQPYLIPFLKKSLPALRLSLLNNQQSLLASTNAAALAAASNTTTS
TIRARLPTTVGPATGMVRTPTTALGVRRPGVQGVQTRMPMVIPQTIRPQGTVARGLTIIA
GRSPVGIGAQASANQKKLNEPGGGTFRDDDDINDVASMAGVNLNEENARIMATNSELVGT
KIRSCKDEAFLPPGLLHRRIMETAKRFGVTEVPAEAVNYISHATQARLRSMLEKVSTIAQ
HRTDGGKDEEWYEPSTDVRAQLRFFEQLDRMEKQRKDEQEREVLLKAAKSRARQEDPEQA
RLKAKAKEMQQAEQAQIRQREANLTALAAIGPRKKRKMDSPGGSTSGTEVALGSGAGSST
ATSSRQQLRQRITRVNLRDFIFCLEQERATSRSLLLYKALLK
NT seq
3009 nt
NT seq
+upstream
nt +downstream
nt
atggcgggagcctccgacccactggaggacatgctcttcaatgaggtagacgaaaaagca
gtaagtgacttagttggctctttggaatcgcaacttgtcagccaaaagacttcgcccgcc
acatattccgatatcaagcgagaaggatctacgggcactgtcagccagttctcagggaaa
gtgcgtgatcaagtggggtctctggagccgccacaacaaggacacccaaaagcggtgtta
aacgcggaaccctgcgcgaatcaggcgatttcgaatacgagtatcaccgcttctacctct
tccatcactactgggggcattataaacgctggtaccaatttacaaacacatggagccgca
tctcgcatcatttcccccgcaccaccaggatcggtaactttgcctgctcagacgactagc
ttcaacagagggactgttttgggtccagctgaaatatcggtggtgactgctccgaactca
aaccccacaacaacaacagctatcaggactccttcacctggattacagagttttaacggt
agccctggagctgtgaagttggtcaactcgccagctgctgctccccaaatcgggtcaggc
ggcaacactgttataagtactgccagtgcgggcaactcaaatatcattgtgtctatggct
tcacagcctccttctctaccaaactatcctgtatctcaatctgctgtggcatttgttact
cccactgttacattgcaaaggcatcccagccccatggccagtgcctcacagaatggagta
atagaccctaaggtttctgcagtggtcacacagggtgcaggttctccgggggccaccacc
tctcaggtcatgaaccgcaataacactctcattaacactacaatggtggcacccaaccag
ccagtctctgctggccaatcaataattctcggagggtctccctctcctgttgttgtgaac
tcacccataagccaggcacagagtgtggcgagtcccactctcgcagccggggtgaaacca
acggttaacggagttggtcagcccacggtgaccatcgtgaggccccccggtgctgctgtg
atgaccacctccgtgcagcagcagagacctgggctggtagcgagtcccacgaggactgtg
gcaccacagatggtcgtcagaccaccacagcagaccaccattcagttaccccctggattt
accataccacccggtatggtgctggtgcgtacagacacaggccagctggtaatggttcct
cagcaggttctagcccaggctcaggctaagacccaacaaggccaggcagctgtctctaac
atctccccccggcctgctacagctaccgctggggccaccatcagagtcggtactcccagc
caggccccttgtacaacccaggctgttcgtctggcctcccctgtccaggccagaatgttg
cagtccccctctcccaccagctctgctatacagaaggcgataaccgtggctcctgcaggt
gcgtctgtgtcggtgaaaatgaccacccctcagaaggcccagacagtgatcacagggggt
caagccctgaccaagcctggtgctgtacggccctctataacctttaacactgcagccagt
gcctccacaacccctacaatggtaactgcaccagtctcccaggaaatgcaagagaatgtg
aagaagtgtaagaacttcctttccaccctgatcaagctggcgtcccacaactccccatct
ccagacacatccaagaacgtcaaggccctggtgcaggatcttctggatgctaaaattgag
cctgaggagttcaccacacgtctgcaggctgagctgaagtcctctccgcagccgtacctc
atccccttcctcaagaaaagccttcctgccctgcggctgtccctgctcaacaaccagcag
tctctgctggcctccaccaacgctgcggccctggccgctgcctccaatactaccaccagc
actatcagggcccggctccccaccaccgtcggccccgccacaggcatggtcaggacaccc
accactgctctgggtgtgagaagaccaggggttcagggggtccagactcgcatgccgatg
gtcatccctcagaccatccggccacaaggcacagttgcaagaggactcactattattgca
ggcagatctcctgtgggcattggtgcccaggcctctgccaatcagaagaagctgaatgag
cctggaggcgggacgttcagagatgatgatgacatcaacgacgtggcgtccatggcgggg
gtgaacctgaacgaggagaacgcccgcatcatggccaccaactctgagctggtgggcacc
aagatccgctcctgtaaggacgaggccttcctcccaccaggcctgctgcacagacgcatc
atggagaccgccaagaggtttggggtgacagaggtcccagctgaggcagtgaactacatc
tcccatgctacccaggccaggctgagatccatgctagagaaagtgtcaactatcgcccag
caccgcactgacgggggcaaggatgaggagtggtatgagccgtcgacggacgtcagggcc
cagctccgcttctttgagcagctggacaggatggagaaacaaaggaaggacgagcaggag
agggaggtcctactcaaggctgccaagagtcgcgccaggcaggaggacccggagcaagct
cggttgaaggcgaaagctaaagagatgcagcaggcggagcaggcccagatccggcagcgt
gaagccaacctcactgccctagcggccatcggtccccgcaagaaacgcaagatggactcg
ccagggggctccacatcgggcacagaggttgctttgggttcaggggccggctcttccaca
gccacctcctcccgccaacagctccgtcagcggatcacgcgagtcaatctcagggacttt
atcttctgcctggagcaggagagggccacatcccggtccttactgctctataaggctctc
ctgaagtag
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