Salvelinus sp. IW2-2015 (Arctic char): 111952725
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Entry
111952725 CDS
T05762
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 3
KO
K12830
splicing factor 3B subunit 3
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111952725
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111952725
03041 Spliceosome [BR:
salp03041
]
111952725
03036 Chromosome and associated proteins [BR:
salp03036
]
111952725
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
111952725
Spliceosome [BR:
salp03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
111952725
Complex B
111952725
Complex C
U2 SnRNP specific factors
111952725
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
111952725
TFTC complex
111952725
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
111952725
NCBI-ProteinID:
XP_023827386
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All DBs
Position
LG26:complement(20215167..20259000)
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AA seq
1113 aa
AA seq
DB search
MFLYNLTLQRATGVTHAIHGNFSGTKMQKIVVSRGKIIEVLRPDANTGKVHTLLTMEVFG
IIRFLMTFRLTGGTKDYIVVGSDSGRILEYHPSKNMFEKIHQETFGNSGCRRIVPGQFLV
VDPKGRAVMIGAIEKQKLVYILNRDAAARLTSSSPLEAHKANTLVYHVVGVDVGFENPMF
TCLEMDYEEADNDPTGEAASNTQQTLTFYELDLGLNHVVCKYSEEHGNFLITVPGGSDGP
SGVLICSENYIIYKNFGDQPDIRCTIPRRRNDLDDPERGMIFVCSATHKTQSMFFFLAQT
EQGDIFKVTLETDEEMVTEIRMKYFDTIPVATAVCVLKTGFLFVSSQFGNPYLYQIAHLG
DDDEETEFSSAMPLEEGDTFFQPRPLKNLVLVDEQENFSPIMSCQASMSSGPPQCPPLEH
QTDASSSPSLSNLVEYDEFDAYIIVSXVNATLVLSIGETVDEVTDSGVLGTTPTLSCPLL
GEDALVQVYPDGIRHICADKRXWKTPGKKTIIRCAVNQRQVVIALTGGELVYFEMDPSGQ
LNEYTERKEMSADVVCMSLANVPPGEQRSRFLAVGLVDNTVRIISLDPSNCLQPLSMQAL
PAQPESLCIVEMGGVEKEDELGAKGTVGFLYLNIGLQNGVLLRTVLDPVTGDLSDTRTRY
LGSRPVTLFRVRMQGQEAVLAMSSRSWLSYSYQSRFHLTPLSYETLEYASGFASEQCPED
IVAISTNTLRILALEKLGAVFNQVAFPLXYTPRKFVIHPETNNLILIEPDHNAYTEATKA
QRKQQMAEVGVTVCRFASGGDDWXGVARDMILNPRSVGGGFIYTYRLGGGGDKLEFMHKT
PVENVSLAIAPFQGRVLVGVGKLLRIYDLGKKKLLRKCENKHVPNLVTGIHTIGQQVIVT
DVQXLFWVRYKRSENQLIISADNTHPRWVTTACLLDYDTMASADKFGNISIVRLPPNSSD
DVDEDPTGNQALWDRGLLNGASQKAEVIMNYHIGETVLSLQKTTLIPGGSESLVYTTLSG
GVGILVPFTSHEDHDFFQHLGMHMRSEFPPLCGRDHLSFRSYYFPVKNVIDGDLCEQFSS
MDPHKQKSVAEELDRTPPEVSKKLEDIRTRYAF
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atgtttctgtataacctgaccctgcagcgtgccactggcgtcacccacgccatccatggc
aacttctcaggaaccaagatgcagaagatagttgtttccagggggaagatcattgaggtc
ctgcgtccagatgccaacacagggaaggttcataccctgctcaccatggaggtgtttggc
attatccgcttccttatgaccttcaggctgactggaggaactaaagactacattgtggtg
ggcagtgactcaggccgcatcctggagtaccacccctccaagaacatgtttgagaagatt
caccaggagacctttggcaacagtggctgtcgtcgcattgtccctggacagttccttgtc
gtcgaccccaagggcagggcagtcatgataggtgccattgagaagcagaagctggtgtac
atcctgaacagagatgcagcagcacgtctcaccagctcctctcccctggaggctcacaag
gccaacacgctggtgtaccacgtggtaggagtggacgtgggctttgagaacccaatgttc
acctgtctagagatggactatgaggaagctgacaatgaccccactggagaggctgcatcc
aacacccagcagacactgaccttctatgagctggacctgggtctgaaccacgtggtgtgc
aagtacagcgaggagcatggcaacttcctaatcacagttcctggaggctctgatggtccc
agtggagttctcatctgttcagagaactacatcatctacaaaaactttggcgatcagcct
gacattcgctgtaccatcccacgcagaaggaatgacctggatgatcctgagagaggcatg
atcttcgtctgctcagccacccacaagacccagtccatgttcttcttcctggcccaaacg
gagcagggggacatcttcaaggtcaccctggagacggatgaggagatggttacagagata
aggatgaagtactttgacaccatccctgtagccacagccgtgtgtgtgctgaagactggc
ttcttatttgtctcttcacagttcggcaacccttacctttaccagatagcccatcttgga
gatgacgatgaagagacagaattctcctctgccatgcccctggaggagggagataccttc
ttccagccacgccccctcaagaacctggtgctggtggacgagcaggagaacttctccccc
atcatgtcctgccaggcttccatgtcttctggacctcctcaatgtccacctcttgaacat
cagactgatgcctcatcttcaccgtcactttccaacctagttgagtatgatgagtttgat
gcctacatcattgtgtccnttgtcaacgccaccctagttctgtctattggagagactgta
gatgaagtgacagattctggtgtcctggggaccacccccaccctctcctgccctctgctg
ggggaggatgctctggtgcaggtgtatcctgatgggattcgtcacatctgtgctgataag
cgtnngtggaagactccagggaagaagaccattattcgctgtgcagtcaaccagaggcag
gtggtcattgctctgactggaggagagctggtttactttgagatggacccgtctggccag
ctgaatgagtacacagaaaggaaggagatgtccgctgatgtggtgtgtatgagcttagcc
aacgtcccgcctggcgagcagcgctcccgtttcctggctgtggggctggtcgacaacaca
gtccgcatcatctctttggatccctcgaactgtcttcagcccctcagtatgcaggccctg
ccagcccagcctgagtctctgtgtatagtggagatgggaggagtagagaaggaagatgag
ctaggagcgaagggcactgttggtttcctctacctcaacatcggactgcagaacggtgtg
ttgctcaggactgtgttggacccagtgactggagacttgtctgatactcgtactcgatac
ctggggtcgcgacctgtgacgctcttccgggtcaggatgcagggacaggaagctgtgttg
gccatgtctagccgctcctggctgagttactcttaccagtcccgcttccacctgacgccc
ctgtcctatgagactctggagtacgcctcaggcttcgcctctgaacagtgtcctgaggac
attgtggccatctccaccaacaccctgaggattctggccttggagaagctgggtgccgtt
ttcaaccaggtggccttccccctgtagtacacacctcgcaagtttgtcatccacccagag
accaacaacttgatcctcatagagcctgatcacaatgcctacacagaggccaccaaggcc
cagcgtaagcagcaaatggcagaggtaggtgtgactgtgtgtcggtttgccagtggaggt
gatgactggntgggggtggcccgggacatgatccttaacccccgctctgtgggaggtggt
ttcatctatacctatcggctgggagggggaggggacaagctggagtttatgcacaagact
ccagtggagaacgtttctctggccatcgctccgttccagggccgtgtgctggtgggcgtt
ggcaaactgctgcgcatctacgacctgggcaagaagaagctgctgcgcaagtgtgagaac
aagcatgtccccaacctggtgactggcatccacaccatcggtcagcaggtcatagtgact
gacgtacagnntctgttctgggtgcgctacaagcgtagcgagaatcagctgatcatctct
gccgacaacacccatcctcgctgggtcaccaccgcctgcctgctggactacgacaccatg
gcttcagctgacaagtttggcaacatcagcattgtgcgtttgccccccaactccagtgac
gacgtggatgaggacccaactgggaaccaggcgttgtgggataggggtctgctgaacgga
gcctctcagaaggctgaagtgatcatgaactaccacatcggggagactgtgctgtcactg
cagaagaccacactgatacccggcggctcagagtctctggtctacacaacactgtctgga
ggcgtcggcatcctggtgcccttcacttcccatgaggaccatgacttctttcagcactta
gggatgcacatgcgctcagagttcccccctctgtgtgggagggaccacctcagcttccgc
tcctactacttccctgtaaagaatgtgatagatggagatctgtgtgagcagttcagctcc
atggacccccacaagcagaagagtgttgctgaagagctggaccgtacaccacctgaggtc
tcaaagaagctggaggacatccgcacacgttatgccttctag
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integrated database retrieval system
