Salvelinus sp. IW2-2015 (Arctic char): 111953019
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Entry
111953019 CDS
T05762
Name
(RefSeq) PDZ domain-containing RING finger protein 4-like
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
salp04121
]
111953019
Enzymes [BR:
salp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111953019
Ubiquitin system [BR:
salp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
111953019
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
PDZ_Tricorn
GRASP55_65
Motif
Other DBs
NCBI-GeneID:
111953019
NCBI-ProteinID:
XP_023827856
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Position
LG26:complement(45969903..46078148)
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AA seq
789 aa
AA seq
DB search
MGCNLCTLQKREEHYKLLYEIAQVNGKDLSKASHDEAVEAFRSAKDPIVVQVLRRNTAGR
GGHVGSTQEVGVVDVVDMCTQTDITFEHIMALAKLRATTPPVPDICPFLLSDSCHSLHTM
EQDYYEGRADGGRTEEFEYEEVELCRLNSQEKLGLTLCYRTDEEEDMAIYVSEVGPNSIA
ARDGRIREGDHILQINGQDVQDREEAVAVLSSEDTRNIVLLVARPEIQLEEAWLDDEHSE
FLEQLKMEMLEEQQREEMELEALQEEQEQPRGTEEDDITATCSSLTQDKDSELGMSDHNA
LLTHIQRRLSQCLRDRQDTGHHRLEEEEEEEELEVDGDRFQQLLELKCQIRNSGEYDLFY
SRHSTIECSLGEPAGGVQHELRMLNEELCSIELECQNIMQAHKLRKGPGGTQRDQVQQVS
PITGRPVPKDQSFLRGSRDSPSRGKLADINKRQEKPEKSDKDSSSAYNTAESSRSTPLAM
DRSPEHSLQRRMVTITNQRNLRSSLASLHATASPSPSPSPTQRSLHRAPIPGKASSPDHS
PNRYESDQTAPADDERSGNGKVTPQHPPRASQIPYLSPSRSSQHRQPNTNIPAHARHYQS
YMQLIQQRSAVEYAQSQLSLLSVVKEPQLIPANEPKMEWKVKIRSDGTRYITKRPIRDKI
LRERALKIKEERSGGMTTDDDAMSEMKMGRYWSKEERKQHLVRAKEQRRRREFMQQSRLE
SLRESPQSSSEGRKEVSIIELSHRKMMKKRNKKILDNWMTIQELMTHGAKAPDDPRAKVH
NAFLSVTTV
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgggctgcaatctgtgcactttacagaaacgagaggaacactataagctgctgtatgag
atcgcacaggtgaatggaaaggacctctccaaggccagtcatgatgaggcagtcgaggcg
ttccgctctgctaaggaccccattgtggtgcaggtcctcaggaggaacactgctggccgc
ggcggccatgttggctccactcaggaagtgggcgtggtggacgtggtggacatgtgcacg
cagacagacatcaccttcgaacatatcatggccctggccaagctccgagccaccactcct
cccgtgcctgacatctgccccttcctgctgtctgacagctgtcactctctccacaccatg
gaacaggattactatgaggggagagctgatggagggaggacagaggagtttgagtatgag
gaggtggagctgtgtcgactgaacagtcaggagaagctgggcctgacgttgtgctacagg
acagacgaggaggaggacatggctatctatgtcagtgaggttgggccaaacagcatcgct
gcaagggacggacgcatcagagagggagaccacattttacagatcaatggtcaggatgtg
caggacagagaggaggctgtagctgtgctctccagtgaagacacaaggaacatcgtactg
ctggtcgccaggcccgagatacagctagaggaggcgtggttggatgatgaacacagtgag
ttcctggagcagttgaagatggagatgttggaggagcagcagagagaagagatggagctg
gaagcattacaggaggaacaggaacagcccagaggaacagaagaggatgacatcactgct
acctgttcctccctaactcaggacaaggacagtgagctggggatgtctgaccacaatgcc
cttctaacccacatccagagacgactgtcccagtgcctgagggatagacaggacactggg
catcatcgtctggaagaagaagaggaggaagaggagttggaggtggacggtgaccgcttc
cagcagctcctggagctgaagtgtcagatccgtaacagcggggagtatgacctgttctac
agcagacatagcaccatcgagtgtagtctgggagagccggctggcggcgtgcagcatgag
ctccgcatgctcaacgaggagctctgcagcattgagcttgagtgccagaacatcatgcag
gcccacaagctccgcaagggcccgggggggacccagagagaccaggtgcagcaggtgtct
cccataaccggccgccccgtgcccaaggaccaaagcttcctccgaggcagcagggactcg
cccagcaggggcaagctggctgacatcaacaagcgccaagagaaaccggagaagtcagac
aaggacagctcgagcgcctacaacacggcagagagctcgcgcagcacgccgctggccatg
gaccgctcccccgagcactccctccagaggaggatggtcaccatcaccaaccagaggaac
ctccgcagtagcctggcaagccttcatgccacagccagccccagtcctagccccagccca
acacaacggtcgctccaccgagcccccatccctggcaaggccagtagccccgaccacagc
cccaaccgctacgagtcggaccagactgccccggcagacgatgaaaggagcgggaacggg
aaagtgacgcctcagcatcctcccagagcttcccagatcccttacctctccccgtcccgt
agctcccagcaccgccagcccaacaccaacatcccggcccacgctcgccactaccagagc
tacatgcagctgatccagcagcgctcggccgtggagtacgctcagagccagctcagcctg
ctcagcgtggtcaaggagccccagttgatccccgccaacgagcccaagatggagtggaag
gtgaagatccgttcggacggcacgcgctacatcacaaagagacccatcagggacaagatc
ctgcgggaacgcgccctcaagatcaaggaggagcgcagcggcgggatgaccacggacgac
gacgctatgtctgagatgaagatggggcggtactggagtaaagaggagaggaagcagcat
ctggtcagggctaaagaacaacggaggagacgggagttcatgcagcagagcaggctggag
agcctgagggagagtcctcagagcagcagcgaaggacgcaaggaggtcagcatcatcgaa
ctgagccataggaagatgatgaagaagcgcaacaagaagatcctggacaactggatgacc
attcaggaactgatgactcacggggccaaagcccctgatgaccccagggccaaagtacat
aatgccttcctatcggtcaccactgtataa
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