Salvelinus sp. IW2-2015 (Arctic char): 111953049
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Entry
111953049 CDS
T05762
Name
(RefSeq) tripartite motif-containing protein 47
KO
K13126
polyadenylate-binding protein
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03015
mRNA surveillance pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111953049
09123 Folding, sorting and degradation
03018 RNA degradation
111953049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111953049
03041 Spliceosome [BR:
salp03041
]
111953049
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
111953049
mRNA cycle factors
Stress granule specific factors
111953049
Spliceosome [BR:
salp03041
]
Complex C
Other components
Complex C specific factors
111953049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRIM_CC
MLLE
zf-C3HC4_4
zf-RING_UBOX
zf-B_box
zf-C3HC4
zf-C3HC4_2
RING_XB3-XBAT31
zf-C3HC4_3
zf-RING_2
U-box
Motif
Other DBs
NCBI-GeneID:
111953049
NCBI-ProteinID:
XP_023827904
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All DBs
Position
LG26:complement(30103201..30107061)
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AA seq
552 aa
AA seq
DB search
MAEATLGQDPFCCSICLDVLKDPVTTACGHSYCMGCIKGCWDQEDLKGVYSCPLCMESFI
PRPVLRKNILLVELMEKQKTTGFKSAPPALCYAGPKDVECDFCTRRKLKAVKSCLVCLAS
YCETHLQPHFESPAFQKHKLVKASTQLQQKICSHHDKPLEVYCRTDQQCICYLCTMNEHK
GHDTAAAERTEKQKQLVENQQKSQQRIQQKEKEMQELRQAVVSLKLSAQVAVEDSERIFT
ELICSIERRNSEVKQQITAQENAEVSRAKRQLKQLEQEVAELRRRDAELEQLSHTEDHIH
FFQSFQSLCVPPGSDALPSISVNPHISFHFVKNFVSEVTEQLEDICKKEIVKLSWEAPPS
DYFMDAIPHTSYYNTNQLAGRRPNPRWITQQQYFQNMQATFSTVRPNVSHMVTPHRMAAQ
AAATVTPVHMPQYKYAAGVRNPSYIHTLPQVVKQQHDVHVQDQEPLTASTLAAAPPQEQK
EMLGQRLYLLIQNMHPSLAGKITGMLLEIDNSELLYMLESPECLRSKVDEAVTVLQAHQA
KQARKMKGKEII
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggcaactttgggtcaggatcccttctgctgttcaatctgtctggatgtactg
aaggatccagtgactactgcctgtggacacagttactgtatgggctgtattaagggctgc
tgggatcaggaagatctgaaaggtgtctacagctgtccactgtgcatggaaagcttcatc
ccaagacctgttttgaggaaaaacatcttattggttgaattaatggagaaacagaagacg
acaggattcaaatctgctcctccagctctctgttatgctggacctaaagatgtggagtgt
gatttctgcactaggaggaaactcaaagctgtcaagtcctgcctggtgtgtctggcatct
tactgtgagactcacctccagcctcactttgaatcccctgcctttcagaagcacaagctg
gtcaaagcctccacacaactacagcagaagatctgctctcatcatgacaaaccactggag
gtttactgccgtaccgatcagcagtgtatctgttatctgtgtacaatgaatgaacataaa
ggccatgatacagctgcagcagaaaggactgagaaacagaaacagttggtagagaatcag
cagaaatcccagcagagaatccagcagaaagagaaggagatgcaggagctgagacaggct
gtggtctctctgaagctctctgcacaggtagcggtggaggacagtgagaggatttttact
gagctgatctgttccattgaaagaaggaactctgaggtgaagcagcagataacagcccag
gaaaatgctgaagtgagtcgggctaaaaggcaactgaagcagctggagcaggaggtggct
gagctgaggaggagagatgctgagctggagcagctttcacacacagaggatcacatccat
ttcttccagagttttcagtctctctgtgtccctcctggatctgatgccttacccagcata
tctgtcaatccacacatatcttttcattttgtgaagaattttgtatctgaggtgacagaa
caactagaggatatctgcaagaaggaaattgtcaaactatcatgggaagcacctccatct
gactacttcatggatgccattccacatacttcttattacaataccaaccaattggcaggg
cggagacccaaccctcgctggataacccaacaacaatattttcagaacatgcaagcgacc
ttcagcactgtgaggcccaacgtgtctcacatggtgacccctcatcgcatggccgcccag
gctgcagctactgtaaccccagtgcacatgcctcagtacaagtatgctgcaggagtgcgc
aacccttcatacattcatacacttccccaggttgttaagcagcagcatgatgtccatgtg
caggaccaggagcctctgactgcctccacgctagctgctgctcctcctcaggaacagaag
gaaatgctgggtcaacgcctctacctgctcatccagaacatgcaccccagtctggcagga
aagatcactggcatgttgctggagattgacaactctgagctgctctacatgctggagtct
ccagagtgtctccgctccaaggtggatgaagctgtgactgtgctgcaggctcaccaggcc
aaacaggcaagaaaaatgaaaggaaaggaaataatttga
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