Salvelinus sp. IW2-2015 (Arctic char): 111953171
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Entry
111953171 CDS
T05762
Name
(RefSeq) E3 ubiquitin/ISG15 ligase TRIM25 isoform X1
KO
K10652
tripartite motif-containing protein 25 [EC:
2.3.2.27
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
111953171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
salp04121
]
111953171
Enzymes [BR:
salp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
111953171
Ubiquitin system [BR:
salp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
111953171
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SPRY
PRY
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-B_box
zf-C3HC4_2
zf-C3HC4
zf-RING_5
zf-C3HC4_4
ANCHR-like_BBOX
U-box
DUF3220
Motif
Other DBs
NCBI-GeneID:
111953171
NCBI-ProteinID:
XP_023828063
LinkDB
All DBs
Position
LG1:5462709..5476017
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AA seq
674 aa
AA seq
DB search
MADDMFSLMSLEDELSCSICLCPFDCPVTIPCGHNFCQECLLETWKDNYSCPQCRTHFTT
KPELKKNTVLSTVVETFKMKSNKSDLPXEXXDLIXWDAVKMEPKEVXILCDTCMEAKAFK
TCLTCMASFCLEHVRPHHENPVFGAHQLNEPLGDLRDRICPDHHKLMEFYCVQHGRCICG
VCLQQVHKGCTFSNPDEQRALQESDLRGKLSLLDGKIDKNQMVISQMSDQQSKLKDSAAS
RKRALEDDYRQIRELLDRDEREALNTVDREQESGQTKLQNLIKKFNQNIAKLSAAKDGVN
SLLSQTQTVAFLQASVDMPAVVAFDPYTPKVNLDSKAMAAWHAYSAVLREHLTHVLKQPV
EARLQILKPAERFAPPLLPNFYEMGGMPPQGHPRMPRSHSPGAPLRANQKKPPQDSNRER
KSDKKRDHKEWKEHKADKNPQKPPNARRESATPVPHTPRDHLRGQSAEPRPRNREDPGQA
SVPPSITSAVKRNDLLQYGTVLTLDPKTAHKRISLTENLTMASVSDEPTPYPDGPARFSV
CSQVLTSKGFSRGRHYWEVKMSSNNFTGIGLAYNSIDRKGPASRLGRNAQSWCVEWFNVK
LSAWHASSETVLQNPNPTRVGVLLDCEEGTATFYNVQDRAYPFHTFVFQFAEAVYPAFWL
FSSGSSVSLCKLQS
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgatatgttttccctcatgagtctcgaagacgaactgagctgtagcatctgc
ctatgtcctttcgactgtccggtgacaattccatgtggacacaacttttgccaagagtgt
ctcctagaaacctggaaagacaactacagctgtccacaatgccggacccacttcaccacc
aaaccagagctgaagaagaacaccgtcctcagcactgttgtggaaacgttcaaaatgaar
tcraataaaagcgacctccccartgagayrgrcgacttaatcawgtgggatgcggtcaag
atggagcccaaagaggtggytatcttgtgygacacctgtatggaagccaaagcrttcaag
acctgcctcacctgtatggcgtcgttctgccttgagcacgtgaggcctcatcatgagaac
ccagtgtttggcgcgcatcagctgaacgagcctctgggcgacctgcgcgaccgtatctgc
cccgaccaccacaagctgatggagttctactgtgtccaacatggccgctgtatctgtggt
gtctgtctgcagcaggtgcataaaggctgtaccttctccaaccctgatgaacaacgggca
ctgcaagagtctgatttgaggggcaagttgagtctgctggatggaaagattgacaagaac
cagatggtcatctctcagatgagtgaccagcagagcaagttgaaggactctgcagccagc
aggaagagagcactagaggatgactaccgtcaaatccgggagctgctggaccgtgacgag
cgtgaggctctgaacaccgtggaccgcgagcaggagagcggtcagaccaaactccagaac
ctcataaagaagttcaaccagaacattgcsaagcttagcgcagcaaargatggcgtcaac
agcctgctcagtcaractcagaccgtggctttcctacaggcctcagttgacatgccggca
gtggtggcctttgacccctataccccgaaggtgaacctggactctaaggccatggcagcc
tggcatgcctactctgcagtcctgagggagcatcttacacatgtactgaaacagccggta
gaggccagactgcagatactcaaaccagctgagaggtttgctcctcctctgctgccaaac
ttctatgaaatgggaggcatgccaccacaaggtcatccgagaatgcctagatcccacagc
ccaggagctcccctcagggcaaaccagaagaagcctccacaagattcaaaccgagagaga
aagtcagacaagaaacgagatcacaaggaatggaaagaacataaggctgacaaaaatccc
caaaagccacctaatgctcgcagagagtccgccactcctgttccacacacaccaagggac
cacctcagaggacaatcagcagaacccagacccaggaacagggaggacccaggacaagca
agtgttcccccaagtatcacctctgcagtaaaacgaaatgacctcctacaatatggcacg
gttctcacccttgaccccaaaacggcccacaagcgcatctccctcacagagaacctgacc
atggcctctgtgtcagacgagcccaccccttaccccgatggccccgcccgcttctctgtc
tgcagccaggtgctcacttccaagggcttctcccgcggccgtcactactgggaggtcaag
atgagcagcaacaacttcaccggcatcggcctggcmtacaacagcatcgaccggaagggt
ccggctagccggctggggcgtaacgcccagtcctggtgcgtcgagtggttcaacgtcaag
ctgtcagcctggcacgccagcagtgagactgtactgcagaacccgaatccgacccgcgtc
ggcgtgctgttggattgcgaggagggaacggccactttctataacgttcaggaccgggca
taccctttccatacgtttgtgttccagttcgccgaggcagtgtacccagcgttctggctc
ttctccagcggctcgtctgttagcctgtgcaagctgcagtcttaa
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