Salvelinus sp. IW2-2015 (Arctic char): 111953432
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Entry
111953432 CDS
T05762
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111953432
09123 Folding, sorting and degradation
03018 RNA degradation
111953432
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111953432
03041 Spliceosome [BR:
salp03041
]
111953432
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111953432
mRNA degradation factors
5'-3' decay
Lsm complex
111953432
Spliceosome [BR:
salp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
111953432
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
111953432
NCBI-ProteinID:
XP_023828453
LinkDB
All DBs
Position
LG27:10531552..10537158
Genome browser
AA seq
91 aa
AA seq
DB search
MAATPATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPEV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggccaccccagctacaaatccatcacagttgctcccacttgagctcgtggacaaa
tgtataggttcccgaatccatattgtcatgaaaaacgacaaagaaattgtcggcaccctg
ttgggtttcgatgattttgtcaacatggtgttggaggacgtgacagaatttgaaatcaca
ccggagggaagaaggataaccaaactggaccagatcctactcaacggcaacaacatcacc
atgctcatacctggaggcgaagggcctgaagtatga
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