Salvelinus sp. IW2-2015 (Arctic char): 111953611
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Entry
111953611 CDS
T05762
Name
(RefSeq) probable ATP-dependent RNA helicase DDX5
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
111953611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
salp03041
]
111953611
03009 Ribosome biogenesis [BR:
salp03009
]
111953611
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111953611
Spliceosome [BR:
salp03041
]
Complex A
U1 snRNP components
U1 related factors
111953611
Complex B
111953611
Ribosome biogenesis [BR:
salp03009
]
Eukaryotic type
Pre-60S particles
Helicases
111953611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Helicase_C_2
ERCC3_RAD25_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
111953611
NCBI-ProteinID:
XP_023828801
LinkDB
All DBs
Position
LG1:complement(5175833..5184510)
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AA seq
631 aa
AA seq
DB search
MPGFSDRDRGRDRGYGGAPRFGGGGGGSRGGPPQGKFGNPGERLRKKHWNMDELPKFEKN
FYQEHPDVTRRPPQEVENYLRSKDVTVKGRDCPKPMMKFHEANFPNYVMDVIAKQGWAEP
TPIQAQGWPLALSGKDMVGIAQTGSGKTLAYLLPAIVHIQHQPFLEHGDGPICLVLAPTR
ELAQQVQQVAAEYGRASRLKSVCVYGGAPKGPQIRDLERGVEICIATPGRLIDFLEAGKT
NLRRCTYLVLDDADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKQS
VQINVGALQLSANHNILQIVDVCNDGEKDDKLLRLLEEIMSEKENKTIIFTETKRRCDEL
TRRMRRDGWPAMGIHGDKSQQERDWVLNEFKYGKAPILIATDVASRGLDVEDVKFVINYD
YPNSSEDYIHRIGRTARSQKTGTAYTFFTPNNMKQASDLIAVLREANQAINPKLLQMAEA
RGGRGGGGRGGFRDDRRDRYSGGRSYGGGGGGGSYRDKDSDRGFGGGPKSAFGAKTQNGV
GYGGSTYDKGASSGGSYGNSYGSNGQASFGATNQVGAFGGQNFQAPPQFGAAQAAAPNGM
GRPPFPFNPQAQQPQQPPPMVPYSMPPPFPQ
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgcctggattttccgacagagatcgtggcagagacagggggtatggaggtgcgcctcgt
tttggaggtggcggtggtggcagtaggggtggaccccctcaggggaaatttggcaaccca
ggcgaaaggctgcgcaaaaaacactggaacatggatgagctcccaaagttcgagaagaac
ttctaccaggagcacccggatgtgacccgcagaccacctcaagaggtggagaactacctg
agaagtaaagacgtaacagtgaaaggcagagactgccccaagcccatgatgaagtttcac
gaggccaattttccaaattatgtgatggatgtgattgccaaacaaggatgggctgagcca
actcctatccaggctcagggttggcctctggccctcagtgggaaagacatggtgggcatc
gcccagacaggctccggtaaaacccttgcttatctgctgcctgcaatcgtgcacattcaa
caccagccattcttggagcatggagacggacctatatgtttggtgctggccccgacccgt
gagctggctcagcaggtgcagcaggttgccgctgagtacggcagggcctcccgcctgaag
tcagtctgtgtctatggtggagcccccaaaggaccccagattcgggaccttgagagaggt
gttgagatctgtattgccaccccagggcgtctcattgacttcctggaggctgggaagacc
aaccttcgcaggtgtacctaccttgtgctggacgaygctgaccgtatgctggacatgggc
ttcgagccccaaatccgcaaaattgtggaccaaattagaccggatcgtcagaccctcatg
tggagtgccacctggcccaaggaggtgcgccagctggctgaggacttcctgaagcagtct
gtccaaatcaacgtgggcgctctgcagctcagcgccaaccacaacatcctgcagatagtg
gacgtgtgcaacgacggagagaaggatgacaaactcctccggctgctggaagagatcatg
agcgagaaggagaacaagaccatcatctttaccgagaccaagagacgctgcgatgagcta
accaggaggatgcgacgagatggctggccagcaatgggtatccacggagacaagagccag
caggagagggactgggttctcaatgagttcaaatacggcaaggcccccatcctcatcgcc
accgatgtggcctcccgcggtctagatgtggaggatgtgaaatttgtcataaattatgac
tatcctaactcctctgaggactatatccaccgcattggacgcacggcccgcagtcaaaaa
acgggcaccgcctacaccttcttcacccccaacaacatgaaacaggccagtgacctcata
gctgtgctccgcgaagctaaccaggctatcaaccccaagctcctccagatggcggaggcc
agaggaggtcgtggaggggggggaagaggtggctttagggatgaccgacgagataggtat
tctggggggaggagttacggtggaggtggtggtggtggtagttacagggacaaggatagc
gacagggggtttggtgggggaccaaagagtgccttcggcgcaaaaacccaaaacggagtg
ggctacgggggtagcacctatgacaagggcgctagctctggcggtagctacggcaacagc
tacggcagcaacggacaggctagcttcggcgccaccaaccaggtgggtgcgttcggcggc
cagaacttccaggcccctccacagtttggagccgcgcaggcggctgccccaaacggcatg
ggtcgcccgccattcccctttaacccacaggcacagcagccccaacaacccccacccatg
gtaccctactctatgcctccacctttcccacagtaa
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