Salvelinus sp. IW2-2015 (Arctic char): 111954190
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Entry
111954190 CDS
T05762
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
111954190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111954190
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
111954190
U7-dependent histone pre-mRNA processing factors
111954190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Lactamase_B_2
Motif
Other DBs
NCBI-GeneID:
111954190
NCBI-ProteinID:
XP_023829487
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Position
LG28:complement(22341523..22360703)
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AA seq
796 aa
AA seq
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MTSIIKLTAVSGVQEESALCYLLQVDEFRFLLDCGWDESFSMDIIDAMKRYVHQVDAVLL
SHPDPLHLGALPYAVGKLGLNCPIYATIPVYKMGQMFMYDLYQSRNNTEDFNLFTLDDVD
CAFDKIQQLKYSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDFNHKR
EIHLNGCTLESVSRPSLLITDSFNATYVQPRRKQRDEQLLTNVMETLRGDGNVLIAVDTA
GRVLELAQLLDQIWRTKDAGLGVYSLALLNNVSYNVVEFSKSQVEWMSDKLMRCFEDKRN
NPFQFRHLSLCHSLADLARVPSPKVVLCSQPDLESGFSRELFIQWCQEAKNSVILTYRTT
PGTLGRYLIDNPGEKMLDLEIRKRVKLEGRELEEYLEKERMKKEAAKKLEQEKEVDVDSS
DESDMEDDLELPAMVKTKHHDLMMKGDGVRKGSFFKQAKKSYPMFPTHEERVKWDEYGEI
IRPEDFLVPELQATEEEKNKLESGMAKGDEPMDQDSSSKVPTKCTSTTENLEIKARVTYI
DYEGRSDGDSIKKIINQMKPRQLVIVHGPPEASLDLAESCKAFTKDIKVYTPKLQETVDA
TSETHIYQVRLKDSLVSSLQFCRAKDTELAWIDGVLDMRVVKVDTGVLPEEGVVKGEKGA
GEEAVEDGELAMDVTPADDGTTDHSVVAQQRAMKTLFGEDMREPSEESDVIPTLEPLPAH
EIPGHQSVFINEPRLSDFKQVLLREGIQAEFVGGVLVCNNMVAVRRTEAGRIGLEGCLCD
DYYKIRELLYQQYAVV
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgacttctattatcaaactgaccgcagtgtcaggggtgcaggaggagtctgccctctgc
tacctgctgcaggtggatgagttccgcttcctcctggactgtggctgggatgagagcttc
tctatggacattattgatgccatgaaaaggtatgtccaccaggttgatgcggtgctcctc
tcccaccctgaccccctgcacctgggggctctgccctacgccgtgggcaagctgggcctc
aactgccccatctacgccaccatccccgtctacaagatgggtcagatgttcatgtatgac
ctgtatcagtcgcgcaacaacactgaggacttcaacctgttcaccctggatgatgtagac
tgcgcttttgataaaatccagcagttgaagtactcccagattgtaaatctaaaagggaaa
ggacatggtctgtccatcactccacttccagctggtcacatgatcggtgggaccatctgg
aagattgtgaaggacggggaagaggagattgtttacgcggtggacttcaaccacaagcga
gagatccacctgaatgggtgtacattggagtcggtgagtcgtccctctctgctcatcaca
gactcctttaacgctacgtacgtgcagccgcgtcgcaaacaaagggacgagcagcttcta
accaatgtgatggagacgctacgcggtgacggcaacgtgctgattgccgtggatacggcg
ggccgtgtgcttgagctggctcaactgctggaccagatctggaggacgaaggacgccggt
ctcggggtctactctctggccctgctcaacaacgtcagctacaacgtggtggagttctcc
aagtctcaggtggagtggatgagtgacaagctgatgcgttgcttcgaggacaagcgcaac
aatcccttccagtttcgccacctgtccctgtgtcacagcctggccgacctggcccgtgtg
cccagccccaaggtggtgctctgcagccagcccgacctggagtctggcttctcccgcgag
ctcttcatccagtggtgccaggaggccaagaactcagtgatcctcacctaccgcaccacg
cctggcaccctgggccgctacctcatcgataaccccggggagaagatgctagacctggag
attagaaaacgggtgaagctggaaggcagggagctggaagaatacctggagaaagagaga
atgaagaaggaagctgccaaaaaacttgaacaagaaaaagaggtggatgtggactccagt
gacgagagcgacatggaggatgacctggagctgccggcgatggtgaagaccaaacaccac
gacctgatgatgaagggagacggcgtccgcaagggcagcttcttcaaacaggccaagaag
tcctaccccatgttccccacccacgaggagagggtcaagtgggacgagtacggagagatc
atcagaccggaggacttcctggtaccagagctccaggccacagaggaggagaagaacaag
ctggagtcaggcatggccaaaggagacgaacccatggaccaagactcctcatccaaagta
cccaccaagtgtacctccactacagagaacctagagatcaaagccagggtgacgtacatc
gactacgaggggcgttcggacggcgactctatcaagaagatcatcaaccagatgaagccg
cggcagctggtgatcgtgcacggccctcccgaggccagcctggacctggccgagtcctgc
aaggccttcaccaaggacattaaggtctacacgcctaagctgcaggagactgtggacgcc
accagtgagacacacatctaccaggtgcggttgaaagactcgctggtgagctcgctgcag
ttttgccgcgccaaggacacggagctggcgtggatcgacggcgtgctggacatgcgcgtg
gtcaaggtggacacaggcgttctgcccgaggagggcgtggtgaagggtgaaaagggagcc
ggcgaggaggccgtggaggacggcgagctggccatggacgtgacccctgctgacgacggc
accacagaccatagcgtggtggctcagcagcgcgccatgaagacgctgtttggcgaggac
atgcgcgagccgtcggaggagagtgacgtcatccccaccctggagcccctgcccgcccac
gagatcccaggccaccagtcggtgttcatcaacgagccgcgcctgtccgacttcaagcag
gtgctgctgagggaaggcatccaggctgagtttgtgggaggagtgctggtgtgcaacaac
atggtggccgtccgcaggacggaggcagggcgcatcggcctggagggctgcctgtgtgat
gactactataaaatccgtgagctgctctatcagcagtatgctgtggtatag
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