Salvelinus sp. IW2-2015 (Arctic char): 111954263
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Entry
111954263 CDS
T05762
Symbol
trim54
Name
(RefSeq) tripartite motif-containing protein 54 isoform X1
KO
K10653
tripartite motif-containing protein 54
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
111954263 (trim54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
salp04121
]
111954263 (trim54)
Ubiquitin system [BR:
salp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
111954263 (trim54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4
RING_XB3-XBAT31
zf-B_box
zf-RING_5
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-RING_6
Sina_RING
COG2_C
Prok-RING_4
CDC37_M
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
111954263
NCBI-ProteinID:
XP_023829612
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All DBs
Position
LG28:complement(15410211..15426728)
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AA seq
368 aa
AA seq
DB search
MNFALGYKPGQLGESSTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDVFQAAN
PLWQSRGSKSMSTGGRFRCPSCRHEAVLDRHGVYGLQRNLLVENIIDIYKQEESSRPLNP
TKVEQQQLMCEEHDEEKINIYCLSCETPTCSMCKVFGQHKDCEVAPLQNVYKRQKTELSD
GIAILVAGNDRIQALLSQMEETCRSIQENGRRQKQSLCDKFDGLYAILEERKKELVGMIS
RQQDDKLDYIRSLMRRHGDHLEGAVNLVETAIQSMEEPQMAVFLQSIKDIFKQISTTAKV
SSMECPEPGYESMAHFVINTENVADMLRTIDFNTIRASGFQEKDGEDGYDLGEDLASLAT
GDVDYGRY
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atgaactttgcactgggctacaaacctgggcaactcggggagtctagcacaatggataac
ttggagaagcagctcatctgccccatctgcctggagatgttcaccaagcctgtggtcata
ctgccctgccagcacaacctctgcaggaagtgtgccaatgacgtcttccaggctgccaac
cctctgtggcagtctcgggggtccaagtccatgtccacagggggtcgtttccgctgccca
tcatgtcgtcacgaggcagtgttggaccgccatggtgtgtatggcctacagaggaacctg
ctagtagagaacatcattgacatctacaagcaagaagagtccagcaggcccctaaacccc
accaaggtggagcagcagcagctgatgtgtgaggagcatgacgaggagaagatcaacatc
tactgcctgagctgtgagacgcccacctgctccatgtgtaaagtgtttggccagcacaag
gactgtgaggtggcccccctgcagaacgtctataagagacagaagacggagctgagtgac
ggcatcgccatcttggtggctgggaacgaccgtatccaggccctcctctctcagatggag
gagacctgcaggtccatccaggagaacggccgtcgtcagaagcagagtctgtgtgataag
tttgacgggctgtatgccatcctggaggagaggaagaaggagttggtggggatgatcagc
cgccagcaggatgacaagctggactacatccgctccctcatgcgtcgccacggagaccac
ctggagggcgccgtcaacctggtggagacagccatccagtccatggaggaaccacagatg
gccgtgttcctacagagcatcaaggatatatttaaacagatcagcaccactgccaaggtg
tccagtatggaatgtccagagccgggctatgagagcatggcccattttgtcatcaacaca
gagaatgtggcagacatgctgaggaccattgacttcaacacaattagggcctcaggtttc
caggaaaaggatggggaggatggttatgatctgggtgaggacttggcatcgctggcaacg
ggggacgtagactatgggcgatactag
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