Salvelinus sp. IW2-2015 (Arctic char): 111954855
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Entry
111954855 CDS
T05762
Name
(RefSeq) CCR4-NOT transcription complex subunit 3-like
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111954855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111954855
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
111954855
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
111954855
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF4407
FlxA
Motif
Other DBs
NCBI-GeneID:
111954855
NCBI-ProteinID:
XP_023830528
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Position
LG30:complement(19583828..19599574)
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AA seq
360 aa
AA seq
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MADKRKLQGEIDRCLKKVTEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKIVERETKTKAYSKEGLGLAQKVDPAQRE
KEEVGNWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKEKQDRIEELKRFIEKHRYHI
RMLETILRMLDNDTLPVDSIPLIAPRGLPFSVPAQQALAFSRQASQNPHGQKREHVLRHS
GPVAPVKGHSCNQQAMACVPPPHSDSVEFYQRLSTETLFFIFYYLEGTKAQYLAAKALKK
QSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEGFTFEYRYLEDRDLQ
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atggctgataaaaggaaacttcaaggtgaaatagatcgatgtttgaaaaaagttacggaa
ggcgtggaacagtttgaagacatttggcaaaagcttcacaatgcagccaatgctaaccag
aaggagaagtatgaagccgacctcaagaaagagattaaaaaactgcagcgtcttcgagac
cagatcaagacgtgggtggcctccaacgagatcaaagacaaaaggcagctagtggagaat
cgcaaactcattgagacgcaaatggagcgtttcaagatcgtggaacgagagaccaagaca
aaggcttactcgaaagaggggctgggcctggcacagaaggtggacccggcccaaagggag
aaggaggaggtcggcaattggctaacgaatacgatagacactctgaacatgcaggtggat
cagtttgagagcgaagtggagtccctctcagtccagactcgaaagaagaagggagacaaa
gagaaacaggaccgcatcgaagagctgaagcgcttcatcgagaagcaccggtaccacatc
cggatgctggagaccatcctgcgcatgctggacaacgacaccttgccggtggactccatc
ccactaattgccccccggggcctcccgttctcggtccctgcccagcaggccctcgctttc
agcaggcaagcctcccagaatccccatgggcagaagagagagcacgtgttgcgccactcg
gggcctgttgcccctgtcaaaggacacagctgtaaccagcaggccatggcgtgtgtgcca
cccccccactccgactctgtagagttctaccagagactgtccacagagacactgttcttc
atcttctactacctagagggcactaaggcccagtatctggcagccaaggccttgaagaag
cagtcgtggcggttccacaccaagtacatgatgtggttccagaggcacgaggagcccaag
accatcacagatgagtttgagcaggggacgtacatctactttgactacgagaagtgggga
caacggaagaaggagggattcacgtttgagtacaggtaccttgaggaccgagacctccag
tga
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