Salvelinus sp. IW2-2015 (Arctic char): 111954991 Help Entry 111954991         CDS       T05762                                  Name (RefSeq) helicase SKI2W-like   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism salp  Salvelinus sp. IW2-2015 (Arctic char) Pathway salp03018   RNA degradation Brite KEGG Orthology (KO) [BR:salp00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     111954991  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:salp03019]     111954991 Enzymes [BR:salp01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      111954991 Messenger RNA biogenesis [BR:salp03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      111954991   mRNA degradation factors    3'-5' decay     Ski complex      111954991 SSDB OrthologParalogGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel Helicase_C DEXQc_Suv3 ResIII MTR4-like_stalk HTH_23 DUF3516 Motif Other DBs NCBI-GeneID:  111954991 NCBI-ProteinID:  XP_023830760 LinkDB All DBs Position LG30:22603293..22638776 Genome browser AA seq 1250 aa AA seqDB search MERIDLPAVGPTDLPISLLEMGCSGRFELITHPQPNDQPLPPQSSLPHGLPPTSVSLETE VEKRFLRDPAWLPIHDTDAAFHRFLKLAERDVHIDSLLHCALSPLHSGISVVRDPTTGML LDFTEVLLGDTGXSAKNSMSLQRPPNPNPSESLRGSNTNYPFLPGGMEELTLEQIKKKSE REEDIDFENGLLTVPPGLKVGMDFIDKDAKTTKGEINLLSLLSTFDDIIDSQPEAEEKEK GHGSGNAPKLPRTNSLEDLGIKDSPSTPGTTSTEKKDGGMTKPAEGQEEKKRWAIPINIT SPCGDFYKRIPNPAFKYPFELDVFQKQAVLRLEAHESVFVAAHTSAGKTVVAEYAIALSQ KHMTRTIYTSPIKALSNQKFRDFKTTFGDVGLLTGDVQLSPEASCLIMTTEILRSMLYNG SEVIRDLEWVIFDEVHYINDAERGVVWEEVLIMLPDHVSIILLSATVPNAVEFSEWVGRI KKKHIYVISTAKRPVPLEHYLYTGNSTKTQKEMFLLLDPSGNFQTKGYYAAIDAKKERTS KHAQSFGTKNSSQNTTPNQDRAVWLSLLHFLSQRQQTPVVAFTFSRTRCDDNARSLTSMD LTSSVEKSEIHSFFQKSLRRLRGGDRQLPQILLIRDLLKRGIGVHHSGILPIMKEVIEML FSRGLVKVLFATETFAMGVNMPARTVVFDSIRKHDGTGFRNLLPGEYIQMAGRAGRRGLD ATGTVIILCKSGVHDMGDLNVMMLGKPTVLQSQFRLTYTMILNLLRVEALRVTDMMRRSF SESHRDTQAHEQQIGQLKQTLSSLPPLDTEGQLSDLLPYYYTVTELRLTAEALQCAVLGS VNGLKALSVGRVVVVNNKQHFNALGVILQVSSDSVNRTFTALIICEKGNEEGGGDSPNGS AFPHLYNTALFTPEGPCSHTVQKLKLQDVSAITVKTLKVIPDRIIDNYNKRQQLRFRLDP PGQAISTATQELLRLAEANPGGAMTLDPVNDFQLKSVDVVEGTLRLRVLQDSLKDFSCIH SPTFSEQFLRVKERICVQEELDKLLFLISDQSLSLLPEYHQRIKVLQSLQYVDSSGAVQL KGRVACQISSHELLLTELLFENALSPLAPEESAALLSCLVFQQKTQVEPHISNTLKEGIE RVLAVAQRIGELQRDCGITQTVEEFVGQFKFGLTEVVYCWARGMPFAEIAQLTDVQEGTV VRCIQRLDEVLKEVRQAARIVGDSVLGSKMEKASLAIRRDIVFTASLYTH NT seq 3753 nt NT seq  +upstreamnt  +downstreamnt atggaaagaatagatctgcccgctgtgggccccacagacctccctatatccctgctggag atgggttgctctggcaggtttgagctcatcacacacccacagcccaatgatcagcccctg cctccacaaagttcgctccctcatggactccctcctactagtgtgagcctggagacagag gtagagaagcgctttctacgcgaccctgcctggcttcccatacacgataccgacgctgcc ttccacaggtttctgaagctggctgagagagatgttcatatagactctcttctccattgt gctctgtctcctctgcactctggcatctcagtagtcagagatccaacaacaggaatgttg ttggacttcactgaggtgttactgggggacacaggcayctctgctaagaattctatgtcc ctgcaacgtccaccaaaccctaatccctctgagagcctacgaggaagcaacaccaactac ccgtttttgcccggtggtatggaggagctgacactggaacaaatcaagaagaaatccgag cgggaggaggacatagactttgagaacgggttactcacagtgccccctggcctgaaagtt gggatggacttcattgacaaagatgccaaaaccacaaagggagaaatcaatctcctgtcc ctcctgtccacctttgatgacatcatagactcccagcctgaggcagaggagaaggagaaa ggccacggaagtggaaacgcacccaaactgcccagaaccaacagcctggaagacctgggg atcaaggactctccctctacacctgggaccacctctacagagaagaaagatggaggaatg accaaaccagcagagggccaggaggagaagaagagatgggcaatcccaataaacatcacc tccccctgcggtgacttctacaaacgtatccctaaccctgccttcaagtatccctttgag ttggacgtgttccagaagcaggcagtgttgaggctggaggcccatgagtctgtgtttgtg gcagctcacacatcagcaggcaaaaccgtggtggcagaatacgccatagcactctcacag aagcacatgaccaggaccatctacacctcccccatcaaggcgctgtccaatcagaagttc cgggacttcaagaccacctttggggacgtggggcttctgaccggcgacgtacagytgagt cctgaagcctcctgtctcatcatgaccactgagatattgaggtccatgctctataatggt tcggaggtcatcagagatttagagtgggtgatctttgacgaggttcactacatcaatgat gctgagagaggagtggtgtgggaggaggttctgatcatgttacccgaccatgtcagcatt attcttctgagtgccactgtccccaacgctgtggagttcagtgagtgggtcgggcgcatt aaaaagaagcacatctatgtgatcagcacagcgaagagacctgtgcctctggagcactac ctgtacacaggcaacagcaccaagacccagaaggagatgttcctactgctggacccttcg ggcaacttccaaaccaaagggtactatgctgctatagatgccaagaaggaacgcaccagt aaacacgcacagtcctttgggacgaaaaattcatctcagaacactacacctaatcaggac cgggcagtgtggctttccctcctccacttcctgtcccagcgccagcagacccccgtggtg gcgttcaccttctccaggacgcgctgcgacgacaatgcccgctctctaacctccatggac ctcaccagctcggtggagaagagcgagatccactccttcttccagaagagcctgagacgc ctcaggggaggggaccgccagctgccccagatcctgttgatcagggacctactgaagagg ggtatcggtgtgcatcacagtggcatcctgccaatcatgaaggaggtcattgagatgctg ttctcgcgggggctagtaaaggttctgtttgccactgagacgtttgctatgggagtgaac atgcctgcgaggacagtggtgtttgacagcatacggaaacacgatggcaccggcttcaga aacctgctacctggtgagtatatccagatggctggtagggcgggtaggagaggtctggac gccacaggcactgtcatcatcctctgcaagtcaggggtacatgacatgggggacctaaat gtcatgatgctggggaagcccacagtgctgcagtcccagttcaggctgacctacaccatg atcctcaacctgctgcgtgtggaagccctccgagtcaccgacatgatgaggaggagcttc tctgagagccacagagacacacaggcccatgagcagcagattggtcagttgaaacagacc ctgtcctctctccctcctctggacacggagggtcagctgtctgacctactgccgtactac tacactgtcactgagctacgcctcaccgctgaggcgctgcagtgtgctgttctgggrtct gtgaatgggttgaaagctctttccgtgggacgagtggtagtggtcaacaacaaacagcac ttcaacgccctcggagtcatcctacaggtttccagtgactcagtgaatcgtacgtttact gctctcatcatctgtgagaaaggcaacgaggagggaggaggggacagccccaacggcagt gccttcccccacctctacaacactgccctctttacacctgaaggtccctgcagtcacacg gtccagaagctgaagctacaggacgtctcagccatcacagtcaagaccctgaaggtgatc cctgaccgaatcatcgacaactacaacaagaggcagcagcttcgcttcaggctcgatcct ccgggtcaagccatctccacggcaacccaggaactcctgcgattggcggaggccaaccca ggcggggcgatgacccttgacccagtgaacgacttccagctgaagagtgtggatgtggtg gagggcaccttgaggctgcgcgtgctgcaggacagcctcaaagacttcagctgcatccac tcacccaccttctcagaacagtttctgcgggtgaaggagagaatttgtgttcaggaggag ctggacaaactgctcttcctcatctcagaccagtccctgtctctactgccagagtaccac cagagaatcaaggtgctccaatccctgcagtacgtggacagtagtggtgcggtgcagctg aagggcagggtggcctgccagatcagtagccatgagctgcttctcacagagctactgttt gagaacgccctgagccccctggcccctgaggagagcgccgccctactgtcctgtctggtc tttcaacagaagacccaggtggagcctcacatcagcaacacactgaaggagggtattgag agagtgctggcggtggcccagcgtattggggagctgcagagggactgtgggataacccag acagtggaagaatttgtgggccagttcaagtttggcctgaccgaggtggtctactgctgg gccagaggcatgccgtttgcagagattgcccagttaacagacgtccaggagggcacggtg gtgcgctgcatccagagactagacgaggtgctgaaggaggtgcgccaggcggcccgcatc gtgggagactcggtcctgggcagcaagatggagaaagcctccctggccatccgcagagac atcgtgttcaccgcctcactctacacacactga

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