Salvelinus sp. IW2-2015 (Arctic char): 111955018
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Entry
111955018 CDS
T05762
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03020
RNA polymerase
salp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
111955018
09124 Replication and repair
03420 Nucleotide excision repair
111955018
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
salp03021
]
111955018
03400 DNA repair and recombination proteins [BR:
salp03400
]
111955018
Enzymes [BR:
salp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
111955018
Transcription machinery [BR:
salp03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
111955018
DNA repair and recombination proteins [BR:
salp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
111955018
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-GeneID:
111955018
NCBI-ProteinID:
XP_023830823
LinkDB
All DBs
Position
LG3:complement(32137179..32154060)
Genome browser
AA seq
1571 aa
AA seq
DB search
MHGPPSGDSACPLRLIKRVQFGIISPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQ
GVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFVNKIMKVLRCVCYSCSKLLVDTN
NPKIKDILQKSKGQPRKRLTHVYDLCKGKNICEGGEEMDNKFGVDQQEHDSEDITKEKGH
GGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVYEIFKRISDEEDVILGLDPK
YSRPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQSGAAAH
VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF
SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPGAKYIIR
DNGDRIDLRFHPKPSDLHLQIGYKVERHMCDGDIIIFNRQPTLHKMSMMGHRVRILPWST
FRMNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDT
LTAVRKFTKRDVFLERGDVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHIN
AIRTHSTHPDEEDSGPYKHISPGDTKVIVENGELIMGILCKKSLGTSAGSLVHICFLEMG
HDVTRLFYSNIQTVVNNWLLIEGASIGIGDSIADAKTYLDIQNTIKKAKQDVIEVIEKAH
NNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKGSKINI
SQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAM
GGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGEAV
EFQNMATLKPSNKAFEKKFRFDCTNERALRRTLQEDVVKDVMTNAQVQSALEREYEKMKD
DREILRAIFPTGDSKVVLPCNLARMIWNAQKIFRINPRTPTDLNPLRVVEGVQELSKKLV
IVNGEDHLSRQAQQNATLLFNIHLRSTLSSRRMTDEFRLSTEAYDWLLGEIESKFNQSIA
HPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKRPKTPSLTV
FLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVTEDQEWVNVYYEMPD
FDVTRISPWLLRIELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRI
MNSDENKFHEDEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKII
ITEEGEFKALQEWILETDGVGLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERE
LNHVISFDGSYVNYRHLSLLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDVLME
ASSHGESDPMKGVSENIMLGQLAPCGTGCFDLLLDAEKCKYGMEIPTNIPGISVAGPTGM
FFGSAPSPMSGMSPAMTPWNTGATPAYGAWSPSIGKAQPGWTLTISRGYSMVHPTCHCTV
PLTHALTLLFC
NT seq
4716 nt
NT seq
+upstream
nt +downstream
nt
atgcacggaccgccctccggcgacagcgcatgcccattgcgcctcatcaagcgagtgcaa
ttcggcatcatcagcccagatgagcttaaacggatgtcggtcacagaagggggaatcaag
taccccgagaccacagaaggaggacgtcctaaacttggtgggctgatggaccccagacaa
ggggtcatcgaacgatccggaaggtgtcaaacgtgtgcaggcaacatgacagaatgcccg
ggccacttcggccacatagagctggcaaagcctgtcttccacgtgggtttcgtcaacaag
atcatgaaggtcctccgatgtgtctgctactcgtgctccaagcttctggtggacacgaat
aacccaaagatcaaagacatcctgcagaagtccaaggggcagcccaggaagcgtctgacc
cacgtgtacgacctgtgtaaaggcaagaacatctgcgagggcggagaggagatggacaac
aagtttggagtggaccagcaggagcacgacagtgaggacatcactaaggagaagggccac
ggtggctgtgggcgctaccagccgcgtatccgccggtcgggcctggagctgtacgctgag
tggaagcacgtgaacgaggactcacaggagaagaagatcctgctgagcccagagcgcgtc
tacgagatcttcaagcgtatctcggacgaggaggatgtcatcctgggcttggaccccaag
tactcccggcccgagtggatgatcgtcacagtactccccgtgccgccactggctgtccgg
cccgccgtcgtcatgcagggctctgctcgtaaccaggacgacttgacacacaagctggcc
gacatcgtcaagatcaacaaccagctgcggcggaacgagcagagcggcgcggcggcccac
gtcatcgctgaggacgtgaagctgctgcagttccacgtggccaccatggtggacaatgag
ctgccaggcctgcccagggcgatgcaaaaatcgggccgcccactcaaatccctcaaacag
cgtctgaaggggaaggaggggcgagtccgaggtaacttgatggggaaacgtgtggacttc
tccgcccgaaccgtcatcacccccgaccccaacctccagatcgaccaagtgggcgtcccg
cgctccatcgcagccaacatgaccttcccagaaatcgtcacaccctttaacattgacagg
ttacaggagctggtgcgcagaggcaacagccagtatcccggagccaaatatataatccgc
gacaacggggacagaatcgacctgcggtttcaccccaaaccaagtgaccttcacctccag
attggctacaaggtggaaagacatatgtgcgacggtgacatcattatcttcaacagacag
cccacgctacataaaatgtctatgatggggcacagagtccgaatcttgccctggtccacc
tttcgaatgaacctcagtgtaaccacaccgtacaatgctgactttgacggggacgagatg
aatctgcatctaccccagtccctggagacgagagctgagatccaggagcttgccatggtg
cctcggatgatcgtcaccccccagtccaacaggcccgtcatgggcatcgtgcaggacacc
ctcaccgcggtgcgcaagttcaccaagagggatgtcttcctagagcggggcgatgtgatg
aacctcctgatgttcctgtccacgtgggacggcaaggtgccccagccagccatcctgaag
ccccggccgctttggacgggcaagcagatcttcagcctcatcatcccgggccacatcaac
gccatccgaacacacagcacccacccagacgaggaggacagtgggccatacaaacacatc
tcccctggggacaccaaggtgatagtggagaatggagagctgatcatgggcatcctgtgt
aagaagtccctgggtacctctgctggctccctggtccacatctgcttcctggagatgggc
cacgacgtcacccgcctcttctactccaacatccagacggtggtcaataactggctgctc
attgagggtgcctctattggtattggtgattctattgctgacgcaaagacttaccttgac
attcagaacaccatcaagaaggccaagcaggatgtaatagaggtcattgagaaggcccac
aacaacgagttggagcccacccctggtaacacgctgaggcagacctttgagaaccaggtg
aatcgcatcctgaacgacgcccgtgacaaaacgggttcctccgcccagaagtccctgtct
gagtacaacaacttcaagtccatggtggtggccggctccaaaggctccaagattaacatc
tctcaggttattgctgtggtggggcagcagaacgtggagggtaaacgtatccccttcggc
ttcaagcaccgcacgctcccccacttcatcaaggatgactacggccctgagagcagaggc
ttcgtggagaactcgtacctggccggcctcacgcccaccgagtttttttttcacgccatg
ggaggcagagaggggcttattgacacggctgtgaagaccgccgaaactggttatatccag
cgtcgtctgatcaagtccatggagtctgtgatggtgaagtacgacgccaccgtgaggaac
tccatcaaccaggtggtgcagctgcgctacggagaggacggcctggccggggaggctgtg
gagttccagaacatggccacgctcaaaccctccaacaaggccttcgagaagaagttcagg
tttgactgcaccaatgagcgggcgctgcggcgcaccctgcaggaggacgttgtgaaggac
gtgatgaccaatgcccaggtgcagagtgccctggagagagagtatgaaaagatgaaggat
gacagagagattctgagggccatcttccccactggggacagcaaggtggtgcttccatgc
aacctggccaggatgatctggaacgcccagaagatcttcaggatcaacccccgcaccccc
acagacctcaaccccctacgagtggtagagggtgtccaggagctgagtaagaagctggtg
attgtgaacggcgaggaccacctgagcagacaggcccagcagaacgccaccctcctcttc
aacatccacctgcgctccacgctcagctcccgacgcatgacagatgaattccgactgagc
actgaggcttacgactggctactgggggagatcgagagcaagttcaaccagtctattgcc
catccgggtgagatggtgggggcgttagccgcccagtcgctgggagaacccgccacccag
atgaccctgaacaccttccactacgctggtgtgtcggccaagaacgtcactctgggtgtg
ccgcgtctcaaggagttgatcaacatctctaagaggcccaagaccccctccctcaccgtg
ttcctgctgggccaggcggcccgcgacgccgagagggccaaggatatcctctgtcggctg
gaacacaccaccctcagaaaggtgactgccaacacagccatctactatgaccctaacccc
cagagcacggtggtgacggaggaccaggagtgggtcaacgtctactatgagatgcctgac
tttgacgtgactcgcatctccccctggctcctccgcatcgagctcgaccgcaaacacatg
actgaccgcaagctgaccatggagcagatcgcagagaagatcaatgcaggtttcggagat
gatctgaactgtatattcaatgacgacaacgccgagaagctggtcttgcgaattcgcatc
atgaacagcgacgagaacaagttccatgaggatgaggaagtggtggacaagatggacgac
gacgtgttcctgaggtgcatcgagtccaacatgctgacggacatgacactgcagggcatc
gagcagatcagcaaggtgtacatgcacttgccccagactgacaacaagaagaagatcatc
attacagaggagggagagttcaaggccctgcaggagtggatcctggagacagatggcgtg
ggtctgatgagggtcctcagtgagaaggacgtggaccctgtcaggaccacctccaacgat
attgtagagatcttcacggtgctgggtattgaggctgtacgtaaggcgctggagagggag
ttgaaccacgtcatctcctttgacggttcctacgtcaactaccgccacttgtcgttgctt
tgcgacaccatgacgtgccgcggtcacctgatggctatcacacgtcatggcatcaacaga
caggacacgggacctctcatgaagtgctcctttgaggagacggtggatgtgctgatggag
gcgtcatcccacggggagagtgacccaatgaagggtgtgtctgagaacatcatgctgggc
cagctggccccctgcgggacgggctgctttgacctgctgctggacgctgagaagtgcaaa
tacggcatggagatccccaccaacatccccggtatcagcgtggctggacccaccggaatg
ttctttggctcggcgcccagccccatgagtggcatgtccccagccatgaccccctggaac
actggagccacccccgcctatggtgcttggtcccccagcattggtaaggctcaacctggg
tggactttgacaatatccagggggtacagcatggtccatcccacctgccactgtactgtt
ccattgactcatgccctgactctactgttctgttga
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