Salvelinus sp. IW2-2015 (Arctic char): 111955050
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Entry
111955050 CDS
T05762
Name
(RefSeq) collagen alpha-1(XIV) chain-like
KO
K08133
collagen type XIV alpha
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
salp00535
]
111955050
Proteoglycans [BR:
salp00535
]
Extracellular matrix (ECM) proteoglycans
Others
111955050
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VWA
fn3
Collagen
VWA_2
Pur_ac_phosph_N
DUF4992
DUF4959
VWA_3
Motif
Other DBs
NCBI-GeneID:
111955050
NCBI-ProteinID:
XP_023830860
LinkDB
All DBs
Position
LG30:17211180..17308928
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AA seq
1883 aa
AA seq
DB search
MQAIGLKTWVWSPLLCLVLISLLPVQAQGQVATPRRLRFKVLSATQLHVSWKEPKGDFES
YRFIYSTQSDAEETELEVTKKEAKVIIDFDPRKLYTVKVTXVKGAQKSKPLQGTFKKPDN
EKVQPQNVRPKNQKDTSVTEENNEISEEQFMCKTPAIADIVILVDGSWSIGRINFRLVRM
FLENLVSAFHVEFDKTRIGLAQYSGDPRIEWHLNTFTTKEAVIDAVKNXPYKGGNTLTGL
ALTYILENSYKPESGSRAGVPKIGILITDGKSQDDVKPPAQSLREAGIELFAIGVKNADE
KELKAIGSPPEETHVYNVADFSAMSSIVERLTRTVCDRVEQLDKAIKGDRGPEVTMASPR
DLVTSEVTARSFRVSWTHAPGXVEKYRVVYYPASGGQPEEKMVQGTVDTVVLNYLLSLTE
YQMAVFAIYASSASEALRGSATTLALPMVNNLELFDITHNTMRARWRVAEGASGYMILYA
PLTEGNDADEKEVKVAETVNEVELENLTPDTEYTVTVYAMXGEEASDPMTSQETTXPLTP
ARNLRFSNVDHSSARLTWEATSKKANGYRIMYVKTNGVQTNEMDVGRITTLLLRNLTSLT
EYTVAIFAIYDEGQAEPLTDSFTTKTVPEPLNLRSSEVSTESFRVTWEHSAHDVVLYRLT
WTPIRGGDTKEMLVNGKMNSHLLTGLRPITEYEVSLIAVFRNEEESNAVTLTESTVARTT
TTTKATTTTTTTQATTKAVVRLGVRNLLLSDHTTFSMEVSWELQDRNVRQYRVAYVTARG
DRAEETKMVPGGQNSLLLHPLLXDMEYKVTVTPVYADGDGPGVSRMGRTLPLSAPRNLRV
SEEWYNRFRITWDTPPSPTMGYRVVYNPISGPGPALETFVGEDVNTMLILNLMSGTEYGV
RVIASYSTGSSETLTGKARTLYLGVTNLNTYQVRMTSVCAQWGAHRHATLYRVVIESLLN
GYKQEARLGGGTTRHCFNDLTANTQYKISVYAQLQDTEGPAVSTTEKTFPVPTPAPTRPP
TTTAPPSIPSVKEVCKAAKADLAFLVDGSWSIGDDNFLKIIRFLYSTTGALDIIGPDGTQ
VAIVQFSDDARTEFKLNSYDNKERLLEAINRISYKGGNTKTGLAIRHVKDTIFTVGGGIR
RGIPKVLVVLTDGRSQDDVNKVSKEMQMEGYIVFAIGFADADYGELVSIASKPSGRHVFF
VDDLDAFKKIEEKLVTFVCEAATATCPSVAMSGSTLPGFRMMEMFGLVEGMYGHVSGVSM
EPGTFNSFPCFRLHNNSLLAQPTKFIHPEGLPSDYTITMLFRLLPETPKEPFALWEILNK
DNEPLVGLILDNGGKTLTFFNHDYKGQFQTVTFEGPEIKKLFYGSFHKLHMAISKTSAKA
VIDCKLVGEKAINAAGNITTDGLEVLGRMVRSRGKKDSSAPFQLQSFDIVCSTSWASRDK
CCELPGLRKEEDCPAMPRACTCSQESKGPPGPTGPPGGPGIRGGRGDRGEPGAVGPIGPV
GDAGTPGLQGPPGPQGPSGRTIMGPPGGPGERGEKGAAGTPGIQGIPGSPGSPGRAGQTG
TRGLPGKDGPQGRTGPPGTIGTPGAPGSPGSSGPPGSLGNQGPPGPAGNKGEKGERGDLQ
SQASVQAIARQVCEQLIQSHMARYSSILNHIPSAPVSVRTVPGPPGEPGRQGGPGPQGEQ
GPSGRPGFPGSNGENGQPGARGLSGEKGDKGSPGTGVQGPRGPVGPPGPTGQGRTGSQGP
SGRPGNPGTPGRPGIPGPVGSAGPPGYCDQNSCVGYNVGEGGIGGDTSDRHNLPLVQLPP
NTYQNYDEVEEEDPYRYGEGGYPSEYYQPNYPAPRPVVPEDPALTQGDEVLRSPGIHRSY
RSLADKNDKKEEEGPGERKMVVP
NT seq
5652 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctataggactgaagacgtgggtatggagtcctctactctgtctggttcttatc
tctctcttacctgtgcaagctcagggtcaagttgccaccccacgaagacttcgtttcaaa
gtcctgagcgcaacccagctgcatgtgtcatggaaagaaccgaaaggagactttgaaagc
tacagatttatttatagcacacaatcagatgcagaggagactgaactagaggtgacaaag
aaggaagccaaagtgatcatagactttgaccccagaaagttgtacacagtcaaggtcact
grtgtgaaaggtgctcagaagagcaagccacttcaaggaacatttaagaagcctgacaat
gagaargtacagccccagaatgtacgacccaaaaaccagaaagacaccagtgtcactgag
gagaacaatgagatatctgaagagcagttcatgtgtaagaccccggccatagcggatatt
gtgatcctggtggacggatcatggagtatcggacggataaacttccgtctggtccgcatg
ttcctggagaatctggttagcgccttccatgtggagtttgacaagacacggataggtctg
gcccagtacagtggtgaccccaggattgagtggcacctgaacactttcaccaccaaagaa
gcagtcatcgacgctgtgaagaacktgccctacaaaggggggaacacactgacgggtctt
gcattaacgtacatcctggagaacagttataaacctgagtccggatcccgggccggcgtt
cccaaaattggaatcctgatcacagatgggaagtctcaagacgatgtcaaacccccggct
cagagtctgagagaggcgggaatagagctgtttgccattggtgtgaagaacgckgatgag
aaagagctgaaggccatcggctcgcctccagaggagacgcatgtctacaacgtggccgac
ttcagcgccatgagctctatcgtggagcgtctgaccaggaccgtctgcgaccgggtcgaa
cagctcgacaaggccatcaaaggcgacagaggcccagaagtcaccatggcctctcccaga
gacctggtgacctcagaggtgacagccaggagtttccgggtgtcgtggacccacgcccca
gggwcggtggagaagtatcgggtggtgtactaccctgccagcgggggccagcccgaggag
aagatggtgcagggcacagtggacacggtggtgctcaactacctcctctccctgactgag
taccagatggccgtgttcgccatctacgccagctcagctagcgaggccctccgaggcagt
gccaccacattggccctgcccatggtgaacaacctggagctgtttgacatcacccacaac
accatgagggcccgctggagggtcgcagagggggcttctggctacatgatcctctatgcc
ccactgaccgagggaaacgacgccgatgagaaggaggtgaaagtggctgagaccgtgaac
gaagtggaactggagaacctgaccccagacacagagtacacagtgaccgtatacgccatg
twcggagaggaggccagtgaccctatgaccagtcaggagaccacgrtacccctgaccccg
gcgcggaacctgcgcttctccaacgtcgaccacagctcggccagactcacctgggaggcg
acgtccaagaaggccaacggttaccgcatcatgtacgtcaagaccaatggagtgcagacc
aatgagatggacgttggccgcatcaccaccctgttgctaaggaacctgacgtcattgacc
gagtacacggtggccatctttgctatctatgacgagggccaggcagagcccttgactgac
agcttcaccactaagacggtcccagagcctctgaacctgaggagcagtgaagtctccaca
gagagcttcagggtcacctgggaacactcagcccacgacgtggtcctttacagactcaca
tggacccccatcagaggaggagacactaaagagatgctagtgaacggtaaaatgaatagc
cacctgctgactggactgaggcccatcactgagtacgaggtctctctgattgctgtcttc
agaaacgaggaagaaagcaacgccgtgaccctcacagagtcaacagtggcaagaacaacg
actaccacaaaagctactactaccacaactaccacacaagctaccaccaaagcagttgtg
cgtctgggtgtgaggaacctcctgctcagcgatcacaccaccttcagcatggaggtgtcc
tgggagctgcaggaccgcaacgtgcgtcagtaccgcgtcgcctatgtcaccgccaggggc
gatcgtgccgaggagacgaaaatggtccckggtggtcagaacagcctcctgctgcaycca
ctgctgwctgacatggagtacaaggtgacggtcaccccggtctacgccgacggagacggc
cccggtgtcagccgcatgggacgcaccttgccactgtctgctcctaggaacctgagagtt
tcggaggaatggtacaaccgcttccgtatcacctgggacacgcccccatcccccactatg
ggctatagggtcgtctacaatcccatctctggtccgggacctgctttggagacctttgtg
ggcgaggacgtgaacaccatgctgatcctgaacctgatgagcggtactgagtacggcgtt
agggtcatcgcctcctactctaccggctccagcgagaccctraccggcaaggccaggaca
ttgtaccttggagtgaccaatctgaacacctaccaggtgaggatgaccagcgtgtgtgcc
cagtggggtgcccaccgccatgccactctgtaccgtgtggtcatcgagtcgctgctcaat
ggatataagcaggaggcaaggctgggaggaggaaccacccggcactgcttcaatgacctg
acagctaacacgcagtacaagatcagtgtgtacgcccaactccaggacacagagggacct
gcagtctccaccacagagaagaccttccctgttcccaccccggcacccaccagaccaccc
actacgaccgctcctcccagtataccctcagtcaaggaagtttgcaaggcggccaaggca
gacctggcattcctagtggacggctcctggagcatcggggatgacaacttcctgaaaatc
atccgcttcctgtacagcaccacaggagccctcgacatcattggaccagatggtactcag
gttgccattgtccagttcagtgacgatgccagaaccgagttcaaacttaactcgtacgac
aacaaggagaggctgctagaggccattaaccgcatctcctataagggagggaacaccaag
acagggctagccatccggcatgtgaaagacaccatcttcacagtgggaggtggtatccgg
aggggcatccccaaagtgctggtggtgttgactgacgggcgctctcaggacgatgtcaac
aaggtctccaaagagatgcagatggaagggtacattgtttttgccattggttttgcggat
gcggactacggggagctggtgagcatcgccagcaagcctagcgggagacacgttttcttt
gtggatgatttagacgccttcaagaaaattgaggaaaagctggtcacttttgtttgtgag
gctgccactgccacttgtccttcggtggcgatgagtggcagtaccttgccaggtttcagg
atgatggagatgtttggcctggtggagggtatgtatggacatgtatcaggagtgtccatg
gagcctggcaccttcaacagcttcccctgcttccgcctgcacaacaactccctccttgcc
cagcccaccaagtttatccaccccgagggtttgccctccgattacaccatcactatgctg
ttccgcctgctgcctgaaacgcccaaggagccctttgcattgtgggagatcctcaacaag
gacaacgagccccttgtgggcctcatcctggacaacggtggcaagaccctcaccttcttc
aaccatgactacaaaggacagtttcagactgtgaccttcgagggacctgagatcaagaag
ctcttctacggcagtttccacaagctacacatggctattagcaagaccagcgccaaggct
gtcattgactgtaagctagtaggggagaaggccatcaacgcggcaggcaacatcaccacg
gatggcctggaggtgctgggacgcatggtgcgctccagggggaagaaggacagctctgca
ccgtttcaactgcagtcgtttgacatcgtctgcagcacgtcctgggccagccgagacaag
tgctgtgagcttcctggtttgaggaaggaggaggactgtcctgccatgccccgtgcctgc
acctgcagccaggaaagcaaaggtccccctggccccactggaccccctggaggacctggg
atcagaggagggagaggggaccgtggagaaccaggagctgtgggaccgataggtccagtt
ggggacgctggtactcctgggctgcaggggcctcctggaccccaggggcccagcggacgt
accatcatgggccctccgggtggtccaggagaaagaggtgagaagggtgcagctggcact
ccaggaatacagggcattcctgggtctcctgggtcaccaggtcgagcgggacaaacagga
acaaggggacttcctggtaaagatggaccccaggggcgaacaggacctccagggactata
ggcactccaggagctcctgggtcaccagggtcaagtggacctccagggtcactgggaaac
cagggacctcctggtcctgccggaaacaaaggagagaagggagaaagaggtgacctgcaa
tcccaggcatcggtccaagcaatcgcccggcaggtctgtgagcagctgatacagagtcac
atggctcgctacagctccatccttaaccacatccccagcgcacccgtctccgtccgcacc
gttccaggtcccccaggagagcccgggcggcagggcggcccaggaccacagggagagcag
gggccctcgggcagaccagggttccccgggtccaacggagaaaatggacaaccaggagcc
agaggtttgtcaggagagaagggcgacaagggaagcccaggcacaggagtccagggtccc
agaggccctgtcggacccccaggaccaacaggtcagggccggacaggtagccagggtcca
tctggtcggccggggaaccctggaacacctgggcggccgggtatccctggaccagtgggg
tcggctggacctcctggatactgtgaccagaactcctgtgtgggctacaacgtaggagag
ggtggcatcggtggtgacacttctgaccgccacaatcttcccttagtccaattgcccccc
aacacctaccagaactatgacgaggtggaggaggaggacccctataggtatggcgagggg
ggctacccctccgagtactatcagcccaactacccggcgcctcgaccggtcgtgcccgag
gacccagccctcacccagggcgacgaagtgctgaggtcccccgggatccaccgctcctac
aggagcctggctgacaagaatgataagaaagaagaagaggggccgggggagaggaagatg
gtcgtcccatga
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