Salvelinus sp. IW2-2015 (Arctic char): 111955276
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Entry
111955276 CDS
T05762
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
111955276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111955276
03036 Chromosome and associated proteins [BR:
salp03036
]
111955276
Enzymes [BR:
salp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
111955276
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
111955276
mRNA degradation factors
5'-3' decay
Decapping complex
111955276
Chromosome and associated proteins [BR:
salp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
111955276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
111955276
NCBI-ProteinID:
XP_023831223
LinkDB
All DBs
Position
LG30:25605616..25657470
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AA seq
490 aa
AA seq
DB search
MASARTENLGPIGMGLNKQNGQLRGVPKPASPQSGPLVLGSLLSKAVGAPQKAGAALEGT
GIRYGDDWKKSLQLPPKDTRVRTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQE
ESIPIALSGRDILARAKNGTGKSGAYLIPMLERIDLKKDYIQAIVMVPTRELALQVSQIS
IQISKHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMV
MDEADKLLSQDFVVLIEDIISFLGKGRQILLYSATFPISVQKFMAKHLQKPYEINLMEEL
TLKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYI
HAKMMQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGR
SGRFGHLGLAINLITSEDRFNLKSIEDQLVTDIKPIPGSIDKSLYVAEFHATNPNCEEEL
KETGRQKVEP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcatccgcaagaacggagaaccttggccctatcggcatgggactgaacaagcagaac
gggcagcttaggggggtgcctaaaccggcctctcctcaatcaggacccctcgtcctgggc
tctctgttaagcaaggctgtaggtgcaccccagaaagcaggtgctgccctggagggaact
ggcattaggtatggagatgactggaaaaagagcctacagctccctcccaaagacacaaga
gtcagaacctctgatgtaacatccactaagggaaatgagtttgaggactactgtctgaag
cgggagctcctgatgggcatctttgagatgggctgggagaagccctcccctatccaggag
gagagcattcctatagccttgtcaggacgagacatcctggcccgagccaagaatggaaca
gggaagagtggggcctacctcatccccatgctggagagaatagacctgaagaaggactat
atacaggctattgtgatggtgcccactcgtgagctggccctgcaggtgagccagatcagt
atccagatcagcaagcacctgggcggagtgaaagtcatggccaccacgggtggcaccaac
ctgcgagatgacatcatgcgcctggacgagactgtgcatgtggtcattgccacacctggc
aggatcttggacttgataaagaagggggtggccaaagtggatagagttcagatgatggtg
atggatgaggcggacaagctgctgtctcaggactttgtggtgctcatcgaggatatcatc
agcttcctgggcaagggccgtcagatcctgctgtactctgccaccttccccatcagcgtg
cagaagttcatggccaagcacctgcagaagccctatgagatcaacctgatggaggagctg
actctgaagggcatcacccagtactacgcctacgtcactgagagacaaaaggtccactgt
ctcaacacactcttctccaggttgcagatcaatcagtccatcatcttctgtaactccacc
cagagagttgagctgctggctaagaagatcacccagctgggctactcctgcttctacatc
cacgccaagatgatgcaggagtacagaaatcgtgtgttccacgacttcagaaatggactc
tgcagaaatcttgtctgcactgatctcttcactagaggtattgacatccaggccgtcaat
gtcgtcatcaacttcgacttccccaagaatgctgagacatacctgcatcgcatcggacga
tcagggaggtttggccacctgggcctggccatcaacctgatcacctctgaagaccgcttc
aatctgaagtccatcgaggaccagttggtcaccgacatcaagcctatccctggcagcatc
gacaagagcctgtacgtggcagaattccacgccaccaaccccaattgcgaggaggagctg
aaggagacaggccgccaaaaggtggagccctag
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