Salvelinus sp. IW2-2015 (Arctic char): 111955431
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Entry
111955431 CDS
T05762
Name
(RefSeq) endoribonuclease ZC3H12A
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
salp03019
]
111955431
Messenger RNA biogenesis [BR:
salp03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
111955431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
111955431
NCBI-ProteinID:
XP_023831430
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All DBs
Position
LG31:31170782..31192567
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AA seq
723 aa
AA seq
DB search
MEIGTISTLSPVNDVLPWKEFSHTARLSPTEPHDTVGWLSTLPALHNHHPPCPICERMHP
SGTQCSAPEESSKTPTEPGEAQLDFYLKLGYXPAQVWTVLQKFGLNTDTNRVLGELVRTG
ASPEGTEKEGAPSTMSILVARGEPPSNLPLTPPPSRGDVPSEEGDALRPIVIDGSNVAMS
HGNKEMFSCLGIQLAVNFFLDRGHTDITVFVPSWRKEQPRPDVLITDQHILRELERKKIV
VFTPSRRVAGKRVVCYDDRFIVKLAHETAGIIVSNDTYRDLQGERQDWKRFIEERLLMYS
FVNDKFMPPDDPLGRHGPTLENFLLKVPRLPRKQPCPYGRKCTYGMKCKFYHPERANQSR
CSLADELRKKAKLSLSEHKHPTAGAGPGLSLEEGVAQKLPLEQRNGSLKKGHISENVLLI
KGSHRSSRRSPTKKDKANRHFMTDLDSALPNGSHSPTDLDSALPNGSHSPTDLDSALPNG
SHSPTDLDSALPSGSQERLDSGLGSFESQVSDPSRDHCDRYGKAGYRNCLSPPSMRQQIY
SLPSNLPSSRSSHSPQPLLGPSAGYQQHRSRGPASTHNNTHSPHHSMGPGSTYHPGKIIY
SPPYYISYGAPIYPVGKHQYRYPNDFQQESRAHPPQQTYWSDPFGTYPQTLLSTAQVEKQ
RHWLLPRTQPHPHGEGREREEVRKKLLAIFNGCLVDKVMGMFPQLIDPQRLAAEILTLQS
QGL
NT seq
2172 nt
NT seq
+upstream
nt +downstream
nt
atggagattggtactatctcaacgctgagcccggtcaatgatgtcttaccatggaaagag
ttctcccacacagcccgtctgagccccacagagccccacgacacagttggatggctgtcc
actctgcctgcccttcacaatcatcatccaccctgtcccatctgtgagagaatgcacccg
agtggcackcaatgctctgccccggaggagagcagcaagacccccacagaacctggagag
gctcagctggacttctaccttaaactgggctacwccccagcgcaggtctggaccgtgttg
cagaagtttggcctgaacacagacactaacagggttctgggggagctggtgcggacggga
gccagcccagaagggactgagaaggagggagccccatctaccatgtctatcctggtggcc
cgaggggagccccccagtaacctgcccctcacccctccgcccagccggggtgatgtaccc
agtgaggagggagatgccctgagacccatagtgatcgatgggagcaacgtggctatgagc
cacgggaacaaggaaatgttttcctgcctgggaatccagctggcggtaaacttcttcctg
gacagaggtcatactgatatcaccgtgtttgttccctcatggaggaaggagcagcctaga
ccagatgtcctcatcacagatcaacacattttgcgtgagctggagaggaagaagatcgtg
gtgttcaccccttcgcgkcgggtagcaggcaaacgggtggtctgctatgacgatcgcttc
atcgtcaagctggcgcatgagaccgccggcatcatcgtgtccaacgacacctaccgtgac
cttcagggcgagaggcaggactggaagcgtttcattgaggagcggctactcatgtactcc
ttcgtcaatgacaagttcatgccccctgatgaccctctgggtcgccatggtcccaccctg
gagaactttctactgaaggttcctcggttaccacggaaacagccgtgcccttatggaagg
aaatgcacttacgggatgaagtgtaaattctaccacccggaacgagccaaccaatcccgt
tgctctctggctgacgagctgcggaagaaggccaagctatctttatcggaacataaacac
cccaccgcaggtgctggacctggcctttctctggaagagggggtggctcagaaactgcct
ctagaacagaggaatggctccctgaagaaaggccacatcagtgagaatgtgcttctgatc
aagggaagccatcgttccagccggaggtccccaactaagaaggacaaggccaaccgacac
ttcatgaccgatctggactcggccctgcccaatggctctcactccccgacagacctggac
tcggccctgcccaatggctctcactccccgacagacctggactcggccctgcccaatggc
tctcactccccgacagacctggactcggccctgcccagtggctctcaggagcggctagat
tctggacttggctccttcgagagccaggtgtctgacccctccagggaccactgtgaccgt
tatgggaaggctgggtacaggaactgcctgtccccccccagtatgagacaacaaatctat
tccctgcctagcaacctgccttctagccgcagctctcattctcctcagcctttactgggc
cccagcgcaggataccaacaacatcgcagcaggggcccagccagcacccacaacaacacc
cacagcccacatcacagcatgggcccaggcagcacctaccacccaggcaagataatctac
agccccccctattacatcagctatggggcaccgatatatccagttgggaagcatcagtac
aggtaccccaatgacttccaacaggagagcagggcccaccctccacagcagacctactgg
tccgatccgttcgggacttatcctcagactctccttagcactgctcaagtagagaagcag
agacactggctcctccctcggacycagccccacccccacggggagggcagggagagagag
gaggtcaggaagaagctgctggctatctttaacggctgtctggtggacaaggtcatgggc
atgtttccccagctcatagacccacagagattggctgctgagatcctcaccctgcagtct
cagggcctgtga
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