Salvelinus sp. IW2-2015 (Arctic char): 111955635
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Entry
111955635 CDS
T05762
Name
(RefSeq) retinoic acid receptor RXR-beta-A isoform X1
KO
K08525
retinoid X receptor beta
Organism
salp
Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03320
PPAR signaling pathway
salp04920
Adipocytokine signaling pathway
Brite
KEGG Orthology (KO) [BR:
salp00001
]
09150 Organismal Systems
09152 Endocrine system
04920 Adipocytokine signaling pathway
111955635
03320 PPAR signaling pathway
111955635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
salp03000
]
111955635
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
salp03310
]
111955635
Transcription factors [BR:
salp03000
]
Eukaryotic type
Zinc finger
Cys4 hepatocyte nuclear factor 4-like
111955635
Nuclear receptors [BR:
salp03310
]
2. Hepatocyte nuclear factor 4 like
2B. Retinoid X receptor (RXR)
111955635
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Gene cluster
GFIT
Motif
Pfam:
Hormone_recep
zf-C4
Nuc_recep-AF1
Motif
Other DBs
NCBI-GeneID:
111955635
NCBI-ProteinID:
XP_023831629
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Position
LG31:complement(9991102..10010409)
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AA seq
480 aa
AA seq
DB search
MGDSRDSRSPDSSSVSSPPSGQRSPPLTPTAAAMTSLPPATSAVNSPISSMGSPFSVISS
SLGSPCLPGTPSVGYGPISSPQINMYTRSAEINSTVSMSGLHAVSSSDDVKPPFGLGGNS
PGGPMLSQKRLCAICGDRSSGKHYGVHSCEGCKGFFKRTVRKDLSYTCRDNKDCLVDKRQ
RNRCQYCRYQKCLAMGMKREVVQDERQRSVQEERQRNKERESEVESTSAVNEEMPVEKIL
EAEMAVEQKTELHADGSSGDSSVNPNDPVTNICQAADKQLFTLVEWAKRVPHFSELALDD
QVILLRAGWNELLIASFSHRSISVKDGILLATGLHVHRNSAHSAGVGAIFDRESAHNAEV
GAIFDRVLTELVSKMRDMQMDKTELGCLRAIILFNPDAKGLSSPSEVELLREKVYASLES
YCKQRYPDQQGRFAKLLLRLPALRSIGLKCLEHLFFFKLIGDTPIDTFLMEMLEAPHQLT
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atgggtgacagcagagattcccgcagcccagacagctcctctgtgtcctcccctccctct
ggccagcgctcgccacccctgacccccacagctgccgcaatgacttctctgccgcccgcc
acctcggccgtcaacagccccatcagcagcatgggctcgcccttctctgtcatcagctcc
tccctggggtcgccctgcctgcccgggacaccctcagtgggttacggccccatcagcagc
ccccagatcaatatgtataccaggagtgcagagatcaactccacagtgtccatgtcgggc
ctgcacgcggtcagcagctcggatgacgtgaagcctccgttcgggctgggaggcaacagc
ccagggggccccatgctctcccaaaagcgcctgtgtgccatctgtggtgaccgctcctcc
ggtaagcactacggagtgcacagctgcgagggctgcaagggtttcttcaagcgcacggtg
cgcaaggacctgagctacacctgccgggacaacaaggactgcctggtggacaagcgccag
cgcaatcgctgccagtactgtcgctaccagaagtgtctggctatgggcatgaagagggaa
gtggtccaagatgaacgacagagatccgtgcaggaagagcgccagaggaacaaggagcgg
gagagcgaggtggagtcgaccagcgccgtcaacgaggaaatgcccgtggaaaagatcctg
gaggccgagatggccgtggagcagaagaccgagctgcatgccgacgggagctccggggac
agctcggtaaatcccaatgacccggtcaccaacatctgccaggctgcagacaagcagctg
tttaccctggtggagtgggccaagagggtcccccacttctctgagctggccctggacgac
caggtcatcctgctacgtgccggttggaacgagctgctgatcgcttccttctctcaccgc
tccatcagtgtgaaggacggcatcctattggccaccggcctacacgtgcacaggaacagc
gcccacagtgccggcgtgggagccatcttcgacagggagagtgcgcacaatgcagaggtt
ggagccatatttgacagagttctcactgagctggtcagtaagatgagagacatgcagatg
gacaagaccgagctcggctgcctccgagccatcatcctcttcaacccagatgccaaggga
ctgtccagcccaagtgaagtggaattgctgagggagaaggtgtacgcatcgctggagtcc
tattgtaaacagagataccccgaccagcagggcaggttcgctaagctcctccttcggctg
ccagcgctgcgctccattggcctgaagtgcctggagcacctgttcttcttcaagctgatt
ggcgacacccctatcgacacgttcctcatggagatgctagaggcgccccaccagctgacc
taa
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